Results 41 - 60 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6356 | 5' | -53.2 | NC_001847.1 | + | 106722 | 0.67 | 0.940075 |
Target: 5'- -aGCCAGcgcggGCGCCgGUugcGCGCCc -3' miRNA: 3'- gaCGGUCuuuuaCGCGGaCA---UGCGGc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 49987 | 0.67 | 0.940075 |
Target: 5'- -aGCCAcGAGg--GCGCCgUGUugcCGCCGg -3' miRNA: 3'- gaCGGU-CUUuuaCGCGG-ACAu--GCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 66764 | 0.67 | 0.940075 |
Target: 5'- -cGCCGGGcacGAA-GCGCCgacGUuuuCGCCGg -3' miRNA: 3'- gaCGGUCU---UUUaCGCGGa--CAu--GCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 3909 | 0.67 | 0.940075 |
Target: 5'- -aGCCAGcgcggGCGCCgGUugcGCGCCc -3' miRNA: 3'- gaCGGUCuuuuaCGCGGaCA---UGCGGc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 98871 | 0.67 | 0.940075 |
Target: 5'- --cCCGGAAGggcgcGUGCGCCUGggcgGCccagGCCGg -3' miRNA: 3'- gacGGUCUUU-----UACGCGGACa---UG----CGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 104172 | 0.67 | 0.935098 |
Target: 5'- -gGCCAuGuccuUGCGCCcGUcgaGCGCCGg -3' miRNA: 3'- gaCGGU-CuuuuACGCGGaCA---UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 57025 | 0.67 | 0.935098 |
Target: 5'- cCUGCugCAGAacaagGAGcGCGcCCUGUGgGCCGa -3' miRNA: 3'- -GACG--GUCU-----UUUaCGC-GGACAUgCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 43542 | 0.67 | 0.935098 |
Target: 5'- -cGCgAGGAGAaGCGCCgccgcGaGCGCCGc -3' miRNA: 3'- gaCGgUCUUUUaCGCGGa----CaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 129780 | 0.67 | 0.935098 |
Target: 5'- -cGCCGGAGccUGgGCCcGgccGCGCCGc -3' miRNA: 3'- gaCGGUCUUuuACgCGGaCa--UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 1359 | 0.67 | 0.935098 |
Target: 5'- -gGCCAuGuccuUGCGCCcGUcgaGCGCCGg -3' miRNA: 3'- gaCGGU-CuuuuACGCGGaCA---UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 36808 | 0.67 | 0.929866 |
Target: 5'- uUGCCGcuucGUGCGCCaccgGcGCGCCGa -3' miRNA: 3'- gACGGUcuuuUACGCGGa---CaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 124522 | 0.67 | 0.929866 |
Target: 5'- -aGCCGGAGGAccaGCGCCagcagggcgcgGgccgGCGCCGg -3' miRNA: 3'- gaCGGUCUUUUa--CGCGGa----------Ca---UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 41092 | 0.67 | 0.929866 |
Target: 5'- gUGCCGGcccagcUGCGCCUGcACGUgGu -3' miRNA: 3'- gACGGUCuuuu--ACGCGGACaUGCGgC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 56815 | 0.67 | 0.929866 |
Target: 5'- -gGCCGGc----GCGCCUGgggGCGCgGg -3' miRNA: 3'- gaCGGUCuuuuaCGCGGACa--UGCGgC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 74335 | 0.67 | 0.929866 |
Target: 5'- -cGCCAuc-AGUGUGUCUGgcggGCGCCa -3' miRNA: 3'- gaCGGUcuuUUACGCGGACa---UGCGGc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 1643 | 0.67 | 0.929866 |
Target: 5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3' miRNA: 3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 21709 | 0.67 | 0.929866 |
Target: 5'- -aGCCGGAGGAccaGCGCCagcagggcgcgGgccgGCGCCGg -3' miRNA: 3'- gaCGGUCUUUUa--CGCGGa----------Ca---UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 104456 | 0.67 | 0.929866 |
Target: 5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3' miRNA: 3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 96629 | 0.67 | 0.924379 |
Target: 5'- -gGCCAGAGcacaGCGCCggcgaccGCGCCGc -3' miRNA: 3'- gaCGGUCUUuua-CGCGGaca----UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 53719 | 0.67 | 0.924379 |
Target: 5'- -gGCCGGcggcugGCG-CUGUGCGCCu -3' miRNA: 3'- gaCGGUCuuuua-CGCgGACAUGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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