miRNA display CGI


Results 41 - 60 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 100443 0.66 0.886176
Target:  5'- cAGCGcgGCGcGCAaGUCCUcGCGCCa- -3'
miRNA:   3'- -UCGCuuUGCuUGUgCGGGA-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 117452 0.66 0.886176
Target:  5'- cGGCGugGCcGACaACGCCaCUggcggugcGCGCCUGg -3'
miRNA:   3'- -UCGCuuUGcUUG-UGCGG-GA--------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 119069 0.66 0.886176
Target:  5'- cAGCGuacUGGAgGCGCCCagcagagGCGCCg- -3'
miRNA:   3'- -UCGCuuuGCUUgUGCGGGa------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 64230 0.66 0.886176
Target:  5'- cGGCGgcGCGAAgcUGCCCgaGUGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUguGCGGGa-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 79968 0.66 0.886176
Target:  5'- uGGaaAAGCuccAGCGCGCCCcGCGUCUGg -3'
miRNA:   3'- -UCgcUUUGc--UUGUGCGGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 85585 0.66 0.879101
Target:  5'- cGGCGccgucGACGGGCGCGCCggcaaagGCGCUa- -3'
miRNA:   3'- -UCGCu----UUGCUUGUGCGGga-----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 56490 0.66 0.879101
Target:  5'- cGGCGAcGCaGGCGCGCgCgaccGCGCCg- -3'
miRNA:   3'- -UCGCUuUGcUUGUGCGgGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 73791 0.66 0.8718
Target:  5'- cGCGggGCGcuggaagcGCACGCCgUGguCGCCg- -3'
miRNA:   3'- uCGCuuUGCu-------UGUGCGGgAC--GCGGac -5'
6357 3' -56.1 NC_001847.1 + 112097 0.66 0.8718
Target:  5'- cGGCGcaAggUGGACugGCUCgagcgGCGCgUGg -3'
miRNA:   3'- -UCGC--UuuGCUUGugCGGGa----CGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 56061 0.66 0.8718
Target:  5'- cGGCGc-ACGGgcacacgucgcACGCGCCCggcuccgGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU-----------UGUGCGGGa------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 57768 0.66 0.8718
Target:  5'- gAGCGAGAgCGG--GCGCCg-GCGCCa- -3'
miRNA:   3'- -UCGCUUU-GCUugUGCGGgaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 104747 0.66 0.8718
Target:  5'- cGGCGGccAGCGccaGCGCCguCUGCGCCc- -3'
miRNA:   3'- -UCGCU--UUGCuugUGCGG--GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 78315 0.66 0.876207
Target:  5'- cGGCGcgGCGcGCGCGCCgCgggcccggcuuggGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuUGUGCGG-Ga------------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 65512 0.66 0.878381
Target:  5'- gGGCGgcGCGcGCAgugcggcCGCCCggccGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuUGU-------GCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 5937 0.66 0.879101
Target:  5'- cGGCGGacGACGGGCcCGCCCgcUGCuucuaGCCUc -3'
miRNA:   3'- -UCGCU--UUGCUUGuGCGGG--ACG-----CGGAc -5'
6357 3' -56.1 NC_001847.1 + 80877 0.66 0.879101
Target:  5'- gAGCGccuCGAGC-CGCUCgucggGCGCCa- -3'
miRNA:   3'- -UCGCuuuGCUUGuGCGGGa----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 25991 0.66 0.879101
Target:  5'- gGGCGGgcgGGCGGGCGCGCag-GCGCg-- -3'
miRNA:   3'- -UCGCU---UUGCUUGUGCGggaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 99203 0.66 0.879101
Target:  5'- cGCGAGGCGGccGCGCGgCggcGCGCCg- -3'
miRNA:   3'- uCGCUUUGCU--UGUGCgGga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 99753 0.66 0.879101
Target:  5'- cGGCaAAGCGAGCguggucaaaGCGCUccagCUGCGCCa- -3'
miRNA:   3'- -UCGcUUUGCUUG---------UGCGG----GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 101457 0.66 0.879101
Target:  5'- cGCGccGCGA--GCG-CCUGCGCCUc -3'
miRNA:   3'- uCGCuuUGCUugUGCgGGACGCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.