miRNA display CGI


Results 61 - 80 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 25991 0.66 0.879101
Target:  5'- gGGCGGgcgGGCGGGCGCGCag-GCGCg-- -3'
miRNA:   3'- -UCGCU---UUGCUUGUGCGggaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 80877 0.66 0.879101
Target:  5'- gAGCGccuCGAGC-CGCUCgucggGCGCCa- -3'
miRNA:   3'- -UCGCuuuGCUUGuGCGGGa----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 69431 0.66 0.871058
Target:  5'- cGGCGGgcucuggGAUGAACGCGUCCggGCGUa-- -3'
miRNA:   3'- -UCGCU-------UUGCUUGUGCGGGa-CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 36163 0.66 0.871058
Target:  5'- cGGCGAGACGuACugggccaaccccuACGCCgUgGCGCgUGg -3'
miRNA:   3'- -UCGCUUUGCuUG-------------UGCGGgA-CGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 102459 0.66 0.870314
Target:  5'- cGGCGccgcacagcuCGAGCGgGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuu-------GCUUGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 109372 0.66 0.869567
Target:  5'- cGCGGAAUGGGCGCagcugggcugcgguGCCgUGcCGCCg- -3'
miRNA:   3'- uCGCUUUGCUUGUG--------------CGGgAC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 105450 0.66 0.86428
Target:  5'- cGCGcccAAGCGAucaGCGCCaucagCUGCGCCa- -3'
miRNA:   3'- uCGC---UUUGCUug-UGCGG-----GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 98375 0.66 0.86428
Target:  5'- cGCGucGCGGGCGCGCUCgaucuccagGCGCa-- -3'
miRNA:   3'- uCGCuuUGCUUGUGCGGGa--------CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 12904 0.66 0.86428
Target:  5'- cGCGGAA-GcGCGCGCCgUGcCGCCg- -3'
miRNA:   3'- uCGCUUUgCuUGUGCGGgAC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 44600 0.66 0.86428
Target:  5'- cGCGcgGCGAGgGcCGCCaggGCGCCg- -3'
miRNA:   3'- uCGCuuUGCUUgU-GCGGga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 4377 0.66 0.8718
Target:  5'- cGCGAccGCGAGCGCGC---GCGCCg- -3'
miRNA:   3'- uCGCUu-UGCUUGUGCGggaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 27927 0.66 0.8718
Target:  5'- cGCGGAggacGCGGACAgG-CCUGgGCCg- -3'
miRNA:   3'- uCGCUU----UGCUUGUgCgGGACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 5937 0.66 0.879101
Target:  5'- cGGCGGacGACGGGCcCGCCCgcUGCuucuaGCCUc -3'
miRNA:   3'- -UCGCU--UUGCUUGuGCGGG--ACG-----CGGAc -5'
6357 3' -56.1 NC_001847.1 + 65512 0.66 0.878381
Target:  5'- gGGCGgcGCGcGCAgugcggcCGCCCggccGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuUGU-------GCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 78315 0.66 0.876207
Target:  5'- cGGCGcgGCGcGCGCGCCgCgggcccggcuuggGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuUGUGCGG-Ga------------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 104747 0.66 0.8718
Target:  5'- cGGCGGccAGCGccaGCGCCguCUGCGCCc- -3'
miRNA:   3'- -UCGCU--UUGCuugUGCGG--GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 57768 0.66 0.8718
Target:  5'- gAGCGAGAgCGG--GCGCCg-GCGCCa- -3'
miRNA:   3'- -UCGCUUU-GCUugUGCGGgaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 56061 0.66 0.8718
Target:  5'- cGGCGc-ACGGgcacacgucgcACGCGCCCggcuccgGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU-----------UGUGCGGGa------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 112097 0.66 0.8718
Target:  5'- cGGCGcaAggUGGACugGCUCgagcgGCGCgUGg -3'
miRNA:   3'- -UCGC--UuuGCUUGugCGGGa----CGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 73791 0.66 0.8718
Target:  5'- cGCGggGCGcuggaagcGCACGCCgUGguCGCCg- -3'
miRNA:   3'- uCGCuuUGCu-------UGUGCGGgAC--GCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.