miRNA display CGI


Results 81 - 100 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 118241 0.66 0.856546
Target:  5'- gAGCGGccCGGgcugguaaaccuGCGCGgCgUGCGCCUGc -3'
miRNA:   3'- -UCGCUuuGCU------------UGUGCgGgACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 102257 0.66 0.856546
Target:  5'- cGCGcgGCGcGCACcguGCCCUccaGCGCCa- -3'
miRNA:   3'- uCGCuuUGCuUGUG---CGGGA---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 93539 0.66 0.856546
Target:  5'- cGGCGGAGCaGAACaACGCCacgCUG-GCCUc -3'
miRNA:   3'- -UCGCUUUG-CUUG-UGCGG---GACgCGGAc -5'
6357 3' -56.1 NC_001847.1 + 91589 0.66 0.856546
Target:  5'- cGGCGAAGCGcGCAaa-CCgcgGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCuUGUgcgGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 89437 0.66 0.856546
Target:  5'- cGGCGGAGCuGAGC-CGCCCaccgGagGCCUa -3'
miRNA:   3'- -UCGCUUUG-CUUGuGCGGGa---Cg-CGGAc -5'
6357 3' -56.1 NC_001847.1 + 80546 0.66 0.856546
Target:  5'- -uCGgcGCGGGCGCGCgCCgccaGCGCCg- -3'
miRNA:   3'- ucGCuuUGCUUGUGCG-GGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 73870 0.66 0.856546
Target:  5'- cGGCGgcGCG---GCGCCCgcgcGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuugUGCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 29017 0.66 0.86428
Target:  5'- cGGCGGcAGCG---GCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCU-UUGCuugUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 12904 0.66 0.86428
Target:  5'- cGCGGAA-GcGCGCGCCgUGcCGCCg- -3'
miRNA:   3'- uCGCUUUgCuUGUGCGGgAC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 98375 0.66 0.86428
Target:  5'- cGCGucGCGGGCGCGCUCgaucuccagGCGCa-- -3'
miRNA:   3'- uCGCuuUGCUUGUGCGGGa--------CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 56061 0.66 0.8718
Target:  5'- cGGCGc-ACGGgcacacgucgcACGCGCCCggcuccgGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU-----------UGUGCGGGa------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 112097 0.66 0.8718
Target:  5'- cGGCGcaAggUGGACugGCUCgagcgGCGCgUGg -3'
miRNA:   3'- -UCGC--UuuGCUUGugCGGGa----CGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 73791 0.66 0.8718
Target:  5'- cGCGggGCGcuggaagcGCACGCCgUGguCGCCg- -3'
miRNA:   3'- uCGCuuUGCu-------UGUGCGGgAC--GCGGac -5'
6357 3' -56.1 NC_001847.1 + 27927 0.66 0.8718
Target:  5'- cGCGGAggacGCGGACAgG-CCUGgGCCg- -3'
miRNA:   3'- uCGCUU----UGCUUGUgCgGGACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 4377 0.66 0.8718
Target:  5'- cGCGAccGCGAGCGCGC---GCGCCg- -3'
miRNA:   3'- uCGCUu-UGCUUGUGCGggaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 69431 0.66 0.871058
Target:  5'- cGGCGGgcucuggGAUGAACGCGUCCggGCGUa-- -3'
miRNA:   3'- -UCGCU-------UUGCUUGUGCGGGa-CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 36163 0.66 0.871058
Target:  5'- cGGCGAGACGuACugggccaaccccuACGCCgUgGCGCgUGg -3'
miRNA:   3'- -UCGCUUUGCuUG-------------UGCGGgA-CGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 102459 0.66 0.870314
Target:  5'- cGGCGccgcacagcuCGAGCGgGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuu-------GCUUGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 109372 0.66 0.869567
Target:  5'- cGCGGAAUGGGCGCagcugggcugcgguGCCgUGcCGCCg- -3'
miRNA:   3'- uCGCUUUGCUUGUG--------------CGGgAC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 105450 0.66 0.86428
Target:  5'- cGCGcccAAGCGAucaGCGCCaucagCUGCGCCa- -3'
miRNA:   3'- uCGC---UUUGCUug-UGCGG-----GACGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.