miRNA display CGI


Results 101 - 120 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 105450 0.66 0.86428
Target:  5'- cGCGcccAAGCGAucaGCGCCaucagCUGCGCCa- -3'
miRNA:   3'- uCGC---UUUGCUug-UGCGG-----GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 116650 0.66 0.856546
Target:  5'- cGGCaGccGCGGGCACGCugguggCCUGCGUgUGg -3'
miRNA:   3'- -UCG-CuuUGCUUGUGCG------GGACGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 98375 0.66 0.86428
Target:  5'- cGCGucGCGGGCGCGCUCgaucuccagGCGCa-- -3'
miRNA:   3'- uCGCuuUGCUUGUGCGGGa--------CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 12904 0.66 0.86428
Target:  5'- cGCGGAA-GcGCGCGCCgUGcCGCCg- -3'
miRNA:   3'- uCGCUUUgCuUGUGCGGgAC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 44600 0.66 0.86428
Target:  5'- cGCGcgGCGAGgGcCGCCaggGCGCCg- -3'
miRNA:   3'- uCGCuuUGCUUgU-GCGGga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 134549 0.67 0.806029
Target:  5'- uGCGGAGCGGcCGCGgagggccaggaCCCgGCGCCg- -3'
miRNA:   3'- uCGCUUUGCUuGUGC-----------GGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 134844 0.67 0.806029
Target:  5'- cGGCGggGCGcgggGACgGCGCCC-GCGCg-- -3'
miRNA:   3'- -UCGCuuUGC----UUG-UGCGGGaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 71560 0.67 0.806029
Target:  5'- aGGCGGucauccacggcAGCGAGCGCaCCUuuUGCGCgCUGg -3'
miRNA:   3'- -UCGCU-----------UUGCUUGUGcGGG--ACGCG-GAC- -5'
6357 3' -56.1 NC_001847.1 + 71816 0.67 0.806029
Target:  5'- cGGCGAGcAgGAGCACGCC--GCGCUg- -3'
miRNA:   3'- -UCGCUU-UgCUUGUGCGGgaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 101377 0.67 0.806029
Target:  5'- uGCGccGCGGGgGCuGCCCgcgGCGCCg- -3'
miRNA:   3'- uCGCuuUGCUUgUG-CGGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 114945 0.67 0.806029
Target:  5'- uGGCGggGCgGGGCGcCGCCCcGCgGUCUa -3'
miRNA:   3'- -UCGCuuUG-CUUGU-GCGGGaCG-CGGAc -5'
6357 3' -56.1 NC_001847.1 + 55461 0.67 0.805133
Target:  5'- cGGCGggGCGcGCGCcgcgcuaGCCgCUGC-CCUGc -3'
miRNA:   3'- -UCGCuuUGCuUGUG-------CGG-GACGcGGAC- -5'
6357 3' -56.1 NC_001847.1 + 15045 0.67 0.805133
Target:  5'- gGGCGAGcuguGCGAGCGCcaucugaccggcgGCCCggggauCGCCUGc -3'
miRNA:   3'- -UCGCUU----UGCUUGUG-------------CGGGac----GCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 122019 0.67 0.848604
Target:  5'- aGGCGgcGCG-GCGcCGCCCgcGCGCCc- -3'
miRNA:   3'- -UCGCuuUGCuUGU-GCGGGa-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 1567 0.67 0.848604
Target:  5'- cGCGAGgccagcACGGcGCGCGCCagcGCGCCg- -3'
miRNA:   3'- uCGCUU------UGCU-UGUGCGGga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 59344 0.67 0.848604
Target:  5'- uGGCGGcGGCGAggucGCGCGCC--GCGCCg- -3'
miRNA:   3'- -UCGCU-UUGCU----UGUGCGGgaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 56014 0.67 0.848604
Target:  5'- cGCGA--CGGGCACGUCCUGgCGgCg- -3'
miRNA:   3'- uCGCUuuGCUUGUGCGGGAC-GCgGac -5'
6357 3' -56.1 NC_001847.1 + 91027 0.67 0.848604
Target:  5'- cGGCGGAGC-AGC-UGCCCgGCGUCUc -3'
miRNA:   3'- -UCGCUUUGcUUGuGCGGGaCGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 10697 0.67 0.848604
Target:  5'- cGCGcc-CGGGCGCgGCCC-GCGCCg- -3'
miRNA:   3'- uCGCuuuGCUUGUG-CGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 18989 0.67 0.848604
Target:  5'- uGCGAAaguuuagcgcACGGGCgGCGCCCUcggccucuucGCGCgUGa -3'
miRNA:   3'- uCGCUU----------UGCUUG-UGCGGGA----------CGCGgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.