miRNA display CGI


Results 121 - 140 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 5193 0.67 0.823601
Target:  5'- cAGCGccGCGAGCGCGgCaagcGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUGUGCgGga--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 130739 0.67 0.823601
Target:  5'- cGCGGAggacGCGGACA-GCgCCUGgGCCg- -3'
miRNA:   3'- uCGCUU----UGCUUGUgCG-GGACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 102875 0.67 0.806029
Target:  5'- cGCGGAcggcGCGAgccacGCACGCgUCUGCGUCa- -3'
miRNA:   3'- uCGCUU----UGCU-----UGUGCG-GGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 132571 0.67 0.806029
Target:  5'- cGGCGGccGCGcAgGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCUu-UGCuUgUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 51678 0.67 0.8149
Target:  5'- gGGCGGcguACGcGCGCGCCgUcgcGCGCCg- -3'
miRNA:   3'- -UCGCUu--UGCuUGUGCGGgA---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 64767 0.67 0.8149
Target:  5'- cAGC---GCGAGCucGCGCCCcgGCGCCc- -3'
miRNA:   3'- -UCGcuuUGCUUG--UGCGGGa-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 99887 0.67 0.8149
Target:  5'- uAGCGcgGCuGAucuccgccGCGCGCCCgccgGCcGCCUGc -3'
miRNA:   3'- -UCGCuuUG-CU--------UGUGCGGGa---CG-CGGAC- -5'
6357 3' -56.1 NC_001847.1 + 57052 0.67 0.821009
Target:  5'- aGGCGGAuCGAGCcCGgccgccgcccggacUCCUGCGCCg- -3'
miRNA:   3'- -UCGCUUuGCUUGuGC--------------GGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 52727 0.67 0.823601
Target:  5'- aAGgGGAG-GAGCGCGCaCCggUGCGCCa- -3'
miRNA:   3'- -UCgCUUUgCUUGUGCG-GG--ACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 82725 0.67 0.823601
Target:  5'- uGCuccACGcGCGgGCCCaGCGCCUGg -3'
miRNA:   3'- uCGcuuUGCuUGUgCGGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 32031 0.67 0.806029
Target:  5'- cGGCGggGCGcgggGACgGCGCCC-GCGCg-- -3'
miRNA:   3'- -UCGCuuUGC----UUG-UGCGGGaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 95513 0.67 0.806029
Target:  5'- gGGCcuGGCGGGCGCGCCaggcuUGCcCCUGg -3'
miRNA:   3'- -UCGcuUUGCUUGUGCGGg----ACGcGGAC- -5'
6357 3' -56.1 NC_001847.1 + 28417 0.67 0.823601
Target:  5'- aGGCGggGCuua-GCGCCCUGgCGCa-- -3'
miRNA:   3'- -UCGCuuUGcuugUGCGGGAC-GCGgac -5'
6357 3' -56.1 NC_001847.1 + 85215 0.67 0.822739
Target:  5'- cGGCGGugcaaaagagcccGACGAAgGCGgCCggcgGCGCCa- -3'
miRNA:   3'- -UCGCU-------------UUGCUUgUGCgGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 27523 0.67 0.815778
Target:  5'- cGGCGGcGGCGGGgACGCCCgagaacggcggcgcgGCGgCUGg -3'
miRNA:   3'- -UCGCU-UUGCUUgUGCGGGa--------------CGCgGAC- -5'
6357 3' -56.1 NC_001847.1 + 80584 0.67 0.8149
Target:  5'- cGCGucACGGGCGCGa-CUGCGUCUu -3'
miRNA:   3'- uCGCuuUGCUUGUGCggGACGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 68079 0.67 0.8149
Target:  5'- cGGCGggGCGA--ACGCCgCgGCGCgaGc -3'
miRNA:   3'- -UCGCuuUGCUugUGCGG-GaCGCGgaC- -5'
6357 3' -56.1 NC_001847.1 + 53952 0.67 0.8149
Target:  5'- cGCGAGGCG-GC-CGCCuCUGUGCUc- -3'
miRNA:   3'- uCGCUUUGCuUGuGCGG-GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 46772 0.67 0.8149
Target:  5'- cGCGggGcCGGuccgcCGCGCCCgcGCGCCc- -3'
miRNA:   3'- uCGCuuU-GCUu----GUGCGGGa-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 31736 0.67 0.806029
Target:  5'- uGCGGAGCGGcCGCGgagggccaggaCCCgGCGCCg- -3'
miRNA:   3'- uCGCUUUGCUuGUGC-----------GGGaCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.