miRNA display CGI


Results 41 - 60 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 57667 0.73 0.48645
Target:  5'- cGGCGGGcCGGGCcggGCGCCCgGCGCCc- -3'
miRNA:   3'- -UCGCUUuGCUUG---UGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 28315 0.73 0.496126
Target:  5'- cGCGAGagGCGGGCGCcggGCCCgGCGCCc- -3'
miRNA:   3'- uCGCUU--UGCUUGUG---CGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 61895 0.73 0.505889
Target:  5'- cGCGcacggccuCGAGCGCGCCC-GCGCCg- -3'
miRNA:   3'- uCGCuuu-----GCUUGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 65452 0.73 0.496126
Target:  5'- cGCGGAcCGAGCGCcgGCCCcGCGCCc- -3'
miRNA:   3'- uCGCUUuGCUUGUG--CGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 55350 0.73 0.496126
Target:  5'- cGGCGguGCuGAACGCGCCgCggGCGCCg- -3'
miRNA:   3'- -UCGCuuUG-CUUGUGCGG-Ga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 131128 0.73 0.496126
Target:  5'- cGCGAGagGCGGGCGCcggGCCCgGCGCCc- -3'
miRNA:   3'- uCGCUU--UGCUUGUG---CGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 91724 0.73 0.515732
Target:  5'- cGCGAcGCGAggcccagcuGCAgCGCCCUGCGCg-- -3'
miRNA:   3'- uCGCUuUGCU---------UGU-GCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 129027 0.73 0.467374
Target:  5'- cGGCGAGGCGcuCGCGCC--GCGCCUc -3'
miRNA:   3'- -UCGCUUUGCuuGUGCGGgaCGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 56263 0.73 0.476865
Target:  5'- uGCGu-ACGAccaccACACGCCCgGCGCCa- -3'
miRNA:   3'- uCGCuuUGCU-----UGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 22350 0.72 0.555816
Target:  5'- uGGCGAGGCGca-GCGCCUcgggGCGCCa- -3'
miRNA:   3'- -UCGCUUUGCuugUGCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 1789 0.72 0.535643
Target:  5'- cGCGu--CGAgagcagcaGCACGCCCUGCGCg-- -3'
miRNA:   3'- uCGCuuuGCU--------UGUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 74314 0.72 0.535643
Target:  5'- cAGCGccGCGGGCGC-CCCUcGCGCCa- -3'
miRNA:   3'- -UCGCuuUGCUUGUGcGGGA-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 116615 0.72 0.525652
Target:  5'- cGGCGcGGACGGcgGCGCGCCCgcaGCGCUg- -3'
miRNA:   3'- -UCGC-UUUGCU--UGUGCGGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 54897 0.72 0.558862
Target:  5'- cGGCGAGGCgcacguuucccggGAGCucgcgggggucuugaGCGCCCUGCGCUUc -3'
miRNA:   3'- -UCGCUUUG-------------CUUG---------------UGCGGGACGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 27703 0.72 0.555816
Target:  5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 9701 0.72 0.555816
Target:  5'- cGCccucccCGGACGCGCCCUGCGCg-- -3'
miRNA:   3'- uCGcuuu--GCUUGUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 128182 0.72 0.525652
Target:  5'- gGGCgGAAGCGccgcCGCGaCCCcGCGCCUGg -3'
miRNA:   3'- -UCG-CUUUGCuu--GUGC-GGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 51222 0.72 0.525652
Target:  5'- gAGCGGGcccugcucGCGGGCGCGCCgCUGCcgGCCg- -3'
miRNA:   3'- -UCGCUU--------UGCUUGUGCGG-GACG--CGGac -5'
6357 3' -56.1 NC_001847.1 + 72214 0.72 0.576204
Target:  5'- cGCGGAGgcaGGGCACGCCCggGcCGUCUGu -3'
miRNA:   3'- uCGCUUUg--CUUGUGCGGGa-C-GCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 53322 0.72 0.535643
Target:  5'- gGGCGAcagGACG-GCGCGCCCcGcCGCCUc -3'
miRNA:   3'- -UCGCU---UUGCuUGUGCGGGaC-GCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.