miRNA display CGI


Results 61 - 80 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 72214 0.72 0.576204
Target:  5'- cGCGGAGgcaGGGCACGCCCggGcCGUCUGu -3'
miRNA:   3'- uCGCUUUg--CUUGUGCGGGa-C-GCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 24090 0.72 0.555816
Target:  5'- cAGCGAGAgGAcCACGCCCUcGUaGCCg- -3'
miRNA:   3'- -UCGCUUUgCUuGUGCGGGA-CG-CGGac -5'
6357 3' -56.1 NC_001847.1 + 128182 0.72 0.525652
Target:  5'- gGGCgGAAGCGccgcCGCGaCCCcGCGCCUGg -3'
miRNA:   3'- -UCG-CUUUGCuu--GUGC-GGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 85170 0.72 0.545699
Target:  5'- cGCGGAggGCGuGCACGgCCUGCGCgUa -3'
miRNA:   3'- uCGCUU--UGCuUGUGCgGGACGCGgAc -5'
6357 3' -56.1 NC_001847.1 + 55533 0.72 0.545699
Target:  5'- cGCGggGCGAccggcgACaACGCCCccgGCGCCc- -3'
miRNA:   3'- uCGCuuUGCU------UG-UGCGGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 59061 0.72 0.545699
Target:  5'- uGGUGAGGCGGcagcucggcugGCGCGCCCU-CGCCc- -3'
miRNA:   3'- -UCGCUUUGCU-----------UGUGCGGGAcGCGGac -5'
6357 3' -56.1 NC_001847.1 + 11301 0.72 0.549739
Target:  5'- cGCGaAGAUGGGCGCGCCCgccgaggccggcggGCGgCUGg -3'
miRNA:   3'- uCGC-UUUGCUUGUGCGGGa-------------CGCgGAC- -5'
6357 3' -56.1 NC_001847.1 + 54897 0.72 0.558862
Target:  5'- cGGCGAGGCgcacguuucccggGAGCucgcgggggucuugaGCGCCCUGCGCUUc -3'
miRNA:   3'- -UCGCUUUG-------------CUUG---------------UGCGGGACGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 27703 0.72 0.555816
Target:  5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 53322 0.72 0.535643
Target:  5'- gGGCGAcagGACG-GCGCGCCCcGcCGCCUc -3'
miRNA:   3'- -UCGCU---UUGCuUGUGCGGGaC-GCGGAc -5'
6357 3' -56.1 NC_001847.1 + 90836 0.72 0.545699
Target:  5'- gGGCGAgaucAGCGAGCgGCGCCCcgGgGCCg- -3'
miRNA:   3'- -UCGCU----UUGCUUG-UGCGGGa-CgCGGac -5'
6357 3' -56.1 NC_001847.1 + 13374 0.72 0.525652
Target:  5'- cGCGAAcgGCGcGCACGUCCgggcGCGCCg- -3'
miRNA:   3'- uCGCUU--UGCuUGUGCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 116615 0.72 0.525652
Target:  5'- cGGCGcGGACGGcgGCGCGCCCgcaGCGCUg- -3'
miRNA:   3'- -UCGC-UUUGCU--UGUGCGGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 51222 0.72 0.525652
Target:  5'- gAGCGGGcccugcucGCGGGCGCGCCgCUGCcgGCCg- -3'
miRNA:   3'- -UCGCUU--------UGCUUGUGCGG-GACG--CGGac -5'
6357 3' -56.1 NC_001847.1 + 75271 0.72 0.545699
Target:  5'- cGCGGAggccGCGcGCGCgGCCCUcggcgaccGCGCCUGg -3'
miRNA:   3'- uCGCUU----UGCuUGUG-CGGGA--------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 34308 0.72 0.555816
Target:  5'- cAGCGAGGCuucGGGCGCG-CUUGCGUCUGc -3'
miRNA:   3'- -UCGCUUUG---CUUGUGCgGGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 112514 0.72 0.555816
Target:  5'- cGCccucccCGGACGCGCCCUGCGCg-- -3'
miRNA:   3'- uCGcuuu--GCUUGUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 18523 0.72 0.565987
Target:  5'- cAGCGcuGCGGGCGCGCCgCcguccGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGG-Ga----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 96560 0.72 0.565987
Target:  5'- cGCGcgcGCGGucuGCugGCCgUGUGCCUGg -3'
miRNA:   3'- uCGCuu-UGCU---UGugCGGgACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 67291 0.72 0.535643
Target:  5'- cGCGucGCGAGCGCGCgCgccaGCGCCg- -3'
miRNA:   3'- uCGCuuUGCUUGUGCGgGa---CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.