Results 81 - 100 of 464 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 51222 | 0.72 | 0.525652 |
Target: 5'- gAGCGGGcccugcucGCGGGCGCGCCgCUGCcgGCCg- -3' miRNA: 3'- -UCGCUU--------UGCUUGUGCGG-GACG--CGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 51992 | 0.71 | 0.586463 |
Target: 5'- cGGCGcaucGCGGACGCGCCC-GaCGCCg- -3' miRNA: 3'- -UCGCuu--UGCUUGUGCGGGaC-GCGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 47878 | 0.71 | 0.586463 |
Target: 5'- cGCGcAGCGcgcGCGCGCCCgcGCGCCg- -3' miRNA: 3'- uCGCuUUGCu--UGUGCGGGa-CGCGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 101153 | 0.71 | 0.616378 |
Target: 5'- cGCGAAGgcugggcccagccCGGccaGCGCGCCCgGCGCCa- -3' miRNA: 3'- uCGCUUU-------------GCU---UGUGCGGGaCGCGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 32567 | 0.71 | 0.627761 |
Target: 5'- gGGCGAccuGGCGGACGC-CaagCUGCGCCUa -3' miRNA: 3'- -UCGCU---UUGCUUGUGcGg--GACGCGGAc -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 82590 | 0.71 | 0.586463 |
Target: 5'- cGCGAAGCGcuCGCGgCg-GCGCCUGu -3' miRNA: 3'- uCGCUUUGCuuGUGCgGgaCGCGGAC- -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 37814 | 0.71 | 0.607074 |
Target: 5'- cGCGGccgGGCGGGCGCGaCgCCgacGCGCCUGc -3' miRNA: 3'- uCGCU---UUGCUUGUGC-G-GGa--CGCGGAC- -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 132703 | 0.71 | 0.627761 |
Target: 5'- cGGCGAGGCG-GCG-GCCCUGCcgGCCg- -3' miRNA: 3'- -UCGCUUUGCuUGUgCGGGACG--CGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 28745 | 0.71 | 0.628797 |
Target: 5'- cGCGAAGCucGCGgGCCCggaccugcagcuggcGCGCCUGc -3' miRNA: 3'- uCGCUUUGcuUGUgCGGGa--------------CGCGGAC- -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 30694 | 0.71 | 0.627761 |
Target: 5'- cGGgGAGACGAGgGCaGCCCgGCGCUccUGg -3' miRNA: 3'- -UCgCUUUGCUUgUG-CGGGaCGCGG--AC- -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 63095 | 0.71 | 0.586463 |
Target: 5'- uGCGGGAcCGggUACGCCCcgGgGCCg- -3' miRNA: 3'- uCGCUUU-GCuuGUGCGGGa-CgCGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 119382 | 0.71 | 0.627761 |
Target: 5'- cGGCGaAAGCGGGC-CGCCC-GCGUCg- -3' miRNA: 3'- -UCGC-UUUGCUUGuGCGGGaCGCGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 61457 | 0.71 | 0.627761 |
Target: 5'- cGGCGAGGCGGuCGCGCagCaGCGCCg- -3' miRNA: 3'- -UCGCUUUGCUuGUGCGg-GaCGCGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 53182 | 0.71 | 0.627761 |
Target: 5'- cGCGuGAUGAGCGCGCCCgcgGUGUUa- -3' miRNA: 3'- uCGCuUUGCUUGUGCGGGa--CGCGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 29890 | 0.71 | 0.627761 |
Target: 5'- cGGCGAGGCG-GCG-GCCCUGCcgGCCg- -3' miRNA: 3'- -UCGCUUUGCuUGUgCGGGACG--CGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 103001 | 0.71 | 0.617412 |
Target: 5'- cGGCGugcGCGGGCgcggcgGCGCCCaGCGCCg- -3' miRNA: 3'- -UCGCuu-UGCUUG------UGCGGGaCGCGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 91002 | 0.71 | 0.617412 |
Target: 5'- cAGCGAGACGAGagcCACGCC--GUGCCg- -3' miRNA: 3'- -UCGCUUUGCUU---GUGCGGgaCGCGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 34030 | 0.71 | 0.607074 |
Target: 5'- cAGUGAuagaccugacGGCGAACGCGCCCgccCGCCc- -3' miRNA: 3'- -UCGCU----------UUGCUUGUGCGGGac-GCGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 79679 | 0.71 | 0.607074 |
Target: 5'- cAGCGGcuAGCGcggcGCGCGCCCcgccgGCGCCa- -3' miRNA: 3'- -UCGCU--UUGCu---UGUGCGGGa----CGCGGac -5' |
|||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 44042 | 0.71 | 0.630867 |
Target: 5'- cAGCGAGGCGcGCGucggggcCGCCCUGUucgugcagcugucguGCCUGc -3' miRNA: 3'- -UCGCUUUGCuUGU-------GCGGGACG---------------CGGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home