miRNA display CGI


Results 101 - 120 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 61457 0.71 0.627761
Target:  5'- cGGCGAGGCGGuCGCGCagCaGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUuGUGCGg-GaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 55235 0.7 0.66911
Target:  5'- cGGCGAcgcuguugGGgGAGCACGCCgaGCGCaUUGg -3'
miRNA:   3'- -UCGCU--------UUgCUUGUGCGGgaCGCG-GAC- -5'
6357 3' -56.1 NC_001847.1 + 101900 0.7 0.648462
Target:  5'- cGCGGcAGCGGAgGCGCCgCgGCGCCc- -3'
miRNA:   3'- uCGCU-UUGCUUgUGCGG-GaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 32248 0.7 0.66911
Target:  5'- gGGCGGAGCccaGAGCGgGCCCgggcccgccGCGCCg- -3'
miRNA:   3'- -UCGCUUUG---CUUGUgCGGGa--------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 32380 0.7 0.679392
Target:  5'- cGGCGucGCGGGCgucGCGCCUUGCGUg-- -3'
miRNA:   3'- -UCGCuuUGCUUG---UGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 47681 0.7 0.648462
Target:  5'- -aCGAAGCGGGCGCGCgCCgcgGgGCCg- -3'
miRNA:   3'- ucGCUUUGCUUGUGCG-GGa--CgCGGac -5'
6357 3' -56.1 NC_001847.1 + 32632 0.7 0.688613
Target:  5'- cGGCGcgGCGcGCGCucuGCCCUGCcugcacgccuucuGCCUGg -3'
miRNA:   3'- -UCGCuuUGCuUGUG---CGGGACG-------------CGGAC- -5'
6357 3' -56.1 NC_001847.1 + 129256 0.7 0.689635
Target:  5'- uGCGAcGGCGcGGC-CGCCCUGCGCg-- -3'
miRNA:   3'- uCGCU-UUGC-UUGuGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 124269 0.7 0.689635
Target:  5'- aGGCGGucugccugGGCGccCGCGCCCgccGCGCCUc -3'
miRNA:   3'- -UCGCU--------UUGCuuGUGCGGGa--CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 91669 0.7 0.679392
Target:  5'- cGGCGGGACGcgaucGCGCGCUCggcgaccGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCu----UGUGCGGGa------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 119939 0.7 0.66911
Target:  5'- cGCGGcGACGAuggcucccguCACGCCCUGCGUa-- -3'
miRNA:   3'- uCGCU-UUGCUu---------GUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 95117 0.7 0.66911
Target:  5'- gGGCGcGGACGAGCcugcaguCGCCggcgCUGCGCUUGg -3'
miRNA:   3'- -UCGC-UUUGCUUGu------GCGG----GACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 49254 0.7 0.66911
Target:  5'- uGGCGccGGCGAACGCGCUCgcucagguccGCGCCg- -3'
miRNA:   3'- -UCGCu-UUGCUUGUGCGGGa---------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 28345 0.7 0.66911
Target:  5'- cGCGggGCc-GCGCGCCCgggcccccgGCGCCc- -3'
miRNA:   3'- uCGCuuUGcuUGUGCGGGa--------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 109615 0.7 0.658797
Target:  5'- cGCGGAGCcgguGCGCGCCaaccGCGCCUu -3'
miRNA:   3'- uCGCUUUGcu--UGUGCGGga--CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 69515 0.7 0.66911
Target:  5'- uGGCGgcGC-AGCcaaGCCCUGCGCCg- -3'
miRNA:   3'- -UCGCuuUGcUUGug-CGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 91997 0.7 0.66911
Target:  5'- cAGCGAcuGCGGGCgcaGCGCCCgcgggcccGCGCCg- -3'
miRNA:   3'- -UCGCUu-UGCUUG---UGCGGGa-------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 13402 0.7 0.678366
Target:  5'- cGCGGgcccugggagaaaGACGGGCGCGCCagcgcGCGCCg- -3'
miRNA:   3'- uCGCU-------------UUGCUUGUGCGGga---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 93105 0.7 0.688613
Target:  5'- aAGCGggGCGGGCuauaaagGCGCC--GCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUG-------UGCGGgaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 27834 0.7 0.689635
Target:  5'- cGCGGAgaucgGCGAGgACGCCg-GCGCCa- -3'
miRNA:   3'- uCGCUU-----UGCUUgUGCGGgaCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.