Results 41 - 60 of 464 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 71981 | 0.73 | 0.48645 |
Target: 5'- cGCGAccGACGuGCGCGCCUgcGCGCCg- -3' miRNA: 3'- uCGCU--UUGCuUGUGCGGGa-CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 28315 | 0.73 | 0.496126 |
Target: 5'- cGCGAGagGCGGGCGCcggGCCCgGCGCCc- -3' miRNA: 3'- uCGCUU--UGCUUGUG---CGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 131128 | 0.73 | 0.496126 |
Target: 5'- cGCGAGagGCGGGCGCcggGCCCgGCGCCc- -3' miRNA: 3'- uCGCUU--UGCUUGUG---CGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 65452 | 0.73 | 0.496126 |
Target: 5'- cGCGGAcCGAGCGCcgGCCCcGCGCCc- -3' miRNA: 3'- uCGCUUuGCUUGUG--CGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 55350 | 0.73 | 0.496126 |
Target: 5'- cGGCGguGCuGAACGCGCCgCggGCGCCg- -3' miRNA: 3'- -UCGCuuUG-CUUGUGCGG-Ga-CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 85881 | 0.73 | 0.496126 |
Target: 5'- cGCGGAccugaGCGAGCGCGUUCgccgGCGCCa- -3' miRNA: 3'- uCGCUU-----UGCUUGUGCGGGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 61895 | 0.73 | 0.505889 |
Target: 5'- cGCGcacggccuCGAGCGCGCCC-GCGCCg- -3' miRNA: 3'- uCGCuuu-----GCUUGUGCGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 72967 | 0.73 | 0.505889 |
Target: 5'- cGCGGAuuggggacGCGGACGCGCCC-GCGCg-- -3' miRNA: 3'- uCGCUU--------UGCUUGUGCGGGaCGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 91724 | 0.73 | 0.515732 |
Target: 5'- cGCGAcGCGAggcccagcuGCAgCGCCCUGCGCg-- -3' miRNA: 3'- uCGCUuUGCU---------UGU-GCGGGACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 128182 | 0.72 | 0.525652 |
Target: 5'- gGGCgGAAGCGccgcCGCGaCCCcGCGCCUGg -3' miRNA: 3'- -UCG-CUUUGCuu--GUGC-GGGaCGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 116615 | 0.72 | 0.525652 |
Target: 5'- cGGCGcGGACGGcgGCGCGCCCgcaGCGCUg- -3' miRNA: 3'- -UCGC-UUUGCU--UGUGCGGGa--CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 51222 | 0.72 | 0.525652 |
Target: 5'- gAGCGGGcccugcucGCGGGCGCGCCgCUGCcgGCCg- -3' miRNA: 3'- -UCGCUU--------UGCUUGUGCGG-GACG--CGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 33587 | 0.72 | 0.525652 |
Target: 5'- cGCGguGCcGACgACGUCCUGCGCCa- -3' miRNA: 3'- uCGCuuUGcUUG-UGCGGGACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 54354 | 0.72 | 0.525652 |
Target: 5'- cAGCGcAACGAGgACGCgCUGCGCgaGc -3' miRNA: 3'- -UCGCuUUGCUUgUGCGgGACGCGgaC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 13374 | 0.72 | 0.525652 |
Target: 5'- cGCGAAcgGCGcGCACGUCCgggcGCGCCg- -3' miRNA: 3'- uCGCUU--UGCuUGUGCGGGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 104602 | 0.72 | 0.535643 |
Target: 5'- cGCGu--CGAgagcagcaGCACGCCCUGCGCg-- -3' miRNA: 3'- uCGCuuuGCU--------UGUGCGGGACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 67291 | 0.72 | 0.535643 |
Target: 5'- cGCGucGCGAGCGCGCgCgccaGCGCCg- -3' miRNA: 3'- uCGCuuUGCUUGUGCGgGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 74314 | 0.72 | 0.535643 |
Target: 5'- cAGCGccGCGGGCGC-CCCUcGCGCCa- -3' miRNA: 3'- -UCGCuuUGCUUGUGcGGGA-CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 1789 | 0.72 | 0.535643 |
Target: 5'- cGCGu--CGAgagcagcaGCACGCCCUGCGCg-- -3' miRNA: 3'- uCGCuuuGCU--------UGUGCGGGACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 53322 | 0.72 | 0.535643 |
Target: 5'- gGGCGAcagGACG-GCGCGCCCcGcCGCCUc -3' miRNA: 3'- -UCGCU---UUGCuUGUGCGGGaC-GCGGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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