Results 61 - 80 of 464 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 90836 | 0.72 | 0.545699 |
Target: 5'- gGGCGAgaucAGCGAGCgGCGCCCcgGgGCCg- -3' miRNA: 3'- -UCGCU----UUGCUUG-UGCGGGa-CgCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 59061 | 0.72 | 0.545699 |
Target: 5'- uGGUGAGGCGGcagcucggcugGCGCGCCCU-CGCCc- -3' miRNA: 3'- -UCGCUUUGCU-----------UGUGCGGGAcGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 80097 | 0.72 | 0.545699 |
Target: 5'- cGCGcGACGAACGCGgccaCCUGCGCa-- -3' miRNA: 3'- uCGCuUUGCUUGUGCg---GGACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 75271 | 0.72 | 0.545699 |
Target: 5'- cGCGGAggccGCGcGCGCgGCCCUcggcgaccGCGCCUGg -3' miRNA: 3'- uCGCUU----UGCuUGUG-CGGGA--------CGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 55533 | 0.72 | 0.545699 |
Target: 5'- cGCGggGCGAccggcgACaACGCCCccgGCGCCc- -3' miRNA: 3'- uCGCuuUGCU------UG-UGCGGGa--CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 83148 | 0.72 | 0.545699 |
Target: 5'- cGGCGu--CGGGCGCGUCCgcgaUGCGCCg- -3' miRNA: 3'- -UCGCuuuGCUUGUGCGGG----ACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 85170 | 0.72 | 0.545699 |
Target: 5'- cGCGGAggGCGuGCACGgCCUGCGCgUa -3' miRNA: 3'- uCGCUU--UGCuUGUGCgGGACGCGgAc -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 11301 | 0.72 | 0.549739 |
Target: 5'- cGCGaAGAUGGGCGCGCCCgccgaggccggcggGCGgCUGg -3' miRNA: 3'- uCGC-UUUGCUUGUGCGGGa-------------CGCgGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 34308 | 0.72 | 0.555816 |
Target: 5'- cAGCGAGGCuucGGGCGCG-CUUGCGUCUGc -3' miRNA: 3'- -UCGCUUUG---CUUGUGCgGGACGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 24090 | 0.72 | 0.555816 |
Target: 5'- cAGCGAGAgGAcCACGCCCUcGUaGCCg- -3' miRNA: 3'- -UCGCUUUgCUuGUGCGGGA-CG-CGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 125163 | 0.72 | 0.555816 |
Target: 5'- uGGCGAGGCGca-GCGCCUcgggGCGCCa- -3' miRNA: 3'- -UCGCUUUGCuugUGCGGGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 112514 | 0.72 | 0.555816 |
Target: 5'- cGCccucccCGGACGCGCCCUGCGCg-- -3' miRNA: 3'- uCGcuuu--GCUUGUGCGGGACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 130516 | 0.72 | 0.555816 |
Target: 5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3' miRNA: 3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 22350 | 0.72 | 0.555816 |
Target: 5'- uGGCGAGGCGca-GCGCCUcgggGCGCCa- -3' miRNA: 3'- -UCGCUUUGCuugUGCGGGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 27703 | 0.72 | 0.555816 |
Target: 5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3' miRNA: 3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 9701 | 0.72 | 0.555816 |
Target: 5'- cGCccucccCGGACGCGCCCUGCGCg-- -3' miRNA: 3'- uCGcuuu--GCUUGUGCGGGACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 54897 | 0.72 | 0.558862 |
Target: 5'- cGGCGAGGCgcacguuucccggGAGCucgcgggggucuugaGCGCCCUGCGCUUc -3' miRNA: 3'- -UCGCUUUG-------------CUUG---------------UGCGGGACGCGGAc -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 18523 | 0.72 | 0.565987 |
Target: 5'- cAGCGcuGCGGGCGCGCCgCcguccGCGCCg- -3' miRNA: 3'- -UCGCuuUGCUUGUGCGG-Ga----CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 50255 | 0.72 | 0.565987 |
Target: 5'- cGGCGAAGCuGGACGCGCUggGCGCgUa -3' miRNA: 3'- -UCGCUUUG-CUUGUGCGGgaCGCGgAc -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 96560 | 0.72 | 0.565987 |
Target: 5'- cGCGcgcGCGGucuGCugGCCgUGUGCCUGg -3' miRNA: 3'- uCGCuu-UGCU---UGugCGGgACGCGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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