miRNA display CGI


Results 81 - 100 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 72214 0.72 0.576204
Target:  5'- cGCGGAGgcaGGGCACGCCCggGcCGUCUGu -3'
miRNA:   3'- uCGCUUUg--CUUGUGCGGGa-C-GCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 63095 0.71 0.586463
Target:  5'- uGCGGGAcCGggUACGCCCcgGgGCCg- -3'
miRNA:   3'- uCGCUUU-GCuuGUGCGGGa-CgCGGac -5'
6357 3' -56.1 NC_001847.1 + 51992 0.71 0.586463
Target:  5'- cGGCGcaucGCGGACGCGCCC-GaCGCCg- -3'
miRNA:   3'- -UCGCuu--UGCUUGUGCGGGaC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 82590 0.71 0.586463
Target:  5'- cGCGAAGCGcuCGCGgCg-GCGCCUGu -3'
miRNA:   3'- uCGCUUUGCuuGUGCgGgaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 47878 0.71 0.586463
Target:  5'- cGCGcAGCGcgcGCGCGCCCgcGCGCCg- -3'
miRNA:   3'- uCGCuUUGCu--UGUGCGGGa-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 37814 0.71 0.607074
Target:  5'- cGCGGccgGGCGGGCGCGaCgCCgacGCGCCUGc -3'
miRNA:   3'- uCGCU---UUGCUUGUGC-G-GGa--CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 79679 0.71 0.607074
Target:  5'- cAGCGGcuAGCGcggcGCGCGCCCcgccgGCGCCa- -3'
miRNA:   3'- -UCGCU--UUGCu---UGUGCGGGa----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 34030 0.71 0.607074
Target:  5'- cAGUGAuagaccugacGGCGAACGCGCCCgccCGCCc- -3'
miRNA:   3'- -UCGCU----------UUGCUUGUGCGGGac-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 101153 0.71 0.616378
Target:  5'- cGCGAAGgcugggcccagccCGGccaGCGCGCCCgGCGCCa- -3'
miRNA:   3'- uCGCUUU-------------GCU---UGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 91002 0.71 0.617412
Target:  5'- cAGCGAGACGAGagcCACGCC--GUGCCg- -3'
miRNA:   3'- -UCGCUUUGCUU---GUGCGGgaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 103001 0.71 0.617412
Target:  5'- cGGCGugcGCGGGCgcggcgGCGCCCaGCGCCg- -3'
miRNA:   3'- -UCGCuu-UGCUUG------UGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 32567 0.71 0.627761
Target:  5'- gGGCGAccuGGCGGACGC-CaagCUGCGCCUa -3'
miRNA:   3'- -UCGCU---UUGCUUGUGcGg--GACGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 61457 0.71 0.627761
Target:  5'- cGGCGAGGCGGuCGCGCagCaGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUuGUGCGg-GaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 53182 0.71 0.627761
Target:  5'- cGCGuGAUGAGCGCGCCCgcgGUGUUa- -3'
miRNA:   3'- uCGCuUUGCUUGUGCGGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 132703 0.71 0.627761
Target:  5'- cGGCGAGGCG-GCG-GCCCUGCcgGCCg- -3'
miRNA:   3'- -UCGCUUUGCuUGUgCGGGACG--CGGac -5'
6357 3' -56.1 NC_001847.1 + 30694 0.71 0.627761
Target:  5'- cGGgGAGACGAGgGCaGCCCgGCGCUccUGg -3'
miRNA:   3'- -UCgCUUUGCUUgUG-CGGGaCGCGG--AC- -5'
6357 3' -56.1 NC_001847.1 + 119382 0.71 0.627761
Target:  5'- cGGCGaAAGCGGGC-CGCCC-GCGUCg- -3'
miRNA:   3'- -UCGC-UUUGCUUGuGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 29890 0.71 0.627761
Target:  5'- cGGCGAGGCG-GCG-GCCCUGCcgGCCg- -3'
miRNA:   3'- -UCGCUUUGCuUGUgCGGGACG--CGGac -5'
6357 3' -56.1 NC_001847.1 + 28745 0.71 0.628797
Target:  5'- cGCGAAGCucGCGgGCCCggaccugcagcuggcGCGCCUGc -3'
miRNA:   3'- uCGCUUUGcuUGUgCGGGa--------------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 131558 0.71 0.628797
Target:  5'- cGCGAAGCucGCGgGCCCggaccugcagcuggcGCGCCUGc -3'
miRNA:   3'- uCGCUUUGcuUGUgCGGGa--------------CGCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.