miRNA display CGI


Results 101 - 120 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 44042 0.71 0.630867
Target:  5'- cAGCGAGGCGcGCGucggggcCGCCCUGUucgugcagcugucguGCCUGc -3'
miRNA:   3'- -UCGCUUUGCuUGU-------GCGGGACG---------------CGGAC- -5'
6357 3' -56.1 NC_001847.1 + 64365 0.7 0.635009
Target:  5'- cGCGAAGCGAGC-CGCCagacaaaaaaaugcgGCGCCc- -3'
miRNA:   3'- uCGCUUUGCUUGuGCGGga-------------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 3159 0.7 0.638114
Target:  5'- cGGCGcgGCGGGC-CGCCUccaGCGCCUc -3'
miRNA:   3'- -UCGCuuUGCUUGuGCGGGa--CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 3912 0.7 0.638114
Target:  5'- cAGCGcGGGCGccgguuGCGCGCCCgcgcugGCGCCg- -3'
miRNA:   3'- -UCGC-UUUGCu-----UGUGCGGGa-----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 100865 0.7 0.638114
Target:  5'- cGCGAGcGCGGcgcccagccgccGCGCGCCgguCUGCGCCUc -3'
miRNA:   3'- uCGCUU-UGCU------------UGUGCGG---GACGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 76928 0.7 0.638114
Target:  5'- cGCccGGCGGGCAgaucCGCCCggaGCGCCUGc -3'
miRNA:   3'- uCGcuUUGCUUGU----GCGGGa--CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 4278 0.7 0.638114
Target:  5'- uGGCGGccACGAgGCGCGCgCCgGCGCCUu -3'
miRNA:   3'- -UCGCUu-UGCU-UGUGCG-GGaCGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 105972 0.7 0.638114
Target:  5'- cGGCGcgGCGGGC-CGCCUccaGCGCCUc -3'
miRNA:   3'- -UCGCuuUGCUUGuGCGGGa--CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 106725 0.7 0.638114
Target:  5'- cAGCGcGGGCGccgguuGCGCGCCCgcgcugGCGCCg- -3'
miRNA:   3'- -UCGC-UUUGCu-----UGUGCGGGa-----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 40863 0.7 0.648462
Target:  5'- -cCGAuuguCGGGCGCGCCCaaUGCGCgUGg -3'
miRNA:   3'- ucGCUuu--GCUUGUGCGGG--ACGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 34506 0.7 0.648462
Target:  5'- gAGCGAGgccgacGCGGACgGCGCCggcgaUGCGCCg- -3'
miRNA:   3'- -UCGCUU------UGCUUG-UGCGGg----ACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 47681 0.7 0.648462
Target:  5'- -aCGAAGCGGGCGCGCgCCgcgGgGCCg- -3'
miRNA:   3'- ucGCUUUGCUUGUGCG-GGa--CgCGGac -5'
6357 3' -56.1 NC_001847.1 + 101900 0.7 0.648462
Target:  5'- cGCGGcAGCGGAgGCGCCgCgGCGCCc- -3'
miRNA:   3'- uCGCU-UUGCUUgUGCGG-GaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 115691 0.7 0.648462
Target:  5'- cGGCGGAGCG-GCugGCCCggcagcggGCGCg-- -3'
miRNA:   3'- -UCGCUUUGCuUGugCGGGa-------CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 3409 0.7 0.658797
Target:  5'- cAGCGGGA-GAGCA-GCCCggggGCGCCa- -3'
miRNA:   3'- -UCGCUUUgCUUGUgCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 109615 0.7 0.658797
Target:  5'- cGCGGAGCcgguGCGCGCCaaccGCGCCUu -3'
miRNA:   3'- uCGCUUUGcu--UGUGCGGga--CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 27200 0.7 0.658797
Target:  5'- cAGCGuuaGGACGGGCGCGCCgggGCGCUc- -3'
miRNA:   3'- -UCGC---UUUGCUUGUGCGGga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 55235 0.7 0.66911
Target:  5'- cGGCGAcgcuguugGGgGAGCACGCCgaGCGCaUUGg -3'
miRNA:   3'- -UCGCU--------UUgCUUGUGCGGgaCGCG-GAC- -5'
6357 3' -56.1 NC_001847.1 + 69515 0.7 0.66911
Target:  5'- uGGCGgcGC-AGCcaaGCCCUGCGCCg- -3'
miRNA:   3'- -UCGCuuUGcUUGug-CGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 32248 0.7 0.66911
Target:  5'- gGGCGGAGCccaGAGCGgGCCCgggcccgccGCGCCg- -3'
miRNA:   3'- -UCGCUUUG---CUUGUgCGGGa--------CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.