miRNA display CGI


Results 61 - 80 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 102459 0.66 0.870314
Target:  5'- cGGCGccgcacagcuCGAGCGgGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuu-------GCUUGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 109372 0.66 0.869567
Target:  5'- cGCGGAAUGGGCGCagcugggcugcgguGCCgUGcCGCCg- -3'
miRNA:   3'- uCGCUUUGCUUGUG--------------CGGgAC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 18451 0.66 0.86428
Target:  5'- cAGCcguGCGGugcCGCGCCCgcaGCGCCg- -3'
miRNA:   3'- -UCGcuuUGCUu--GUGCGGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 81229 0.66 0.86428
Target:  5'- cGGCGGcAGCGGcgGCGgGCCaggCUGgGCCUGc -3'
miRNA:   3'- -UCGCU-UUGCU--UGUgCGG---GACgCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 89051 0.66 0.86428
Target:  5'- cGCGGAA---GCGgGCCggGCGCCUGg -3'
miRNA:   3'- uCGCUUUgcuUGUgCGGgaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 109666 0.66 0.86428
Target:  5'- gGGgGggGCGGcgcuugcuuugGCcCGCCUUGCGCUUu -3'
miRNA:   3'- -UCgCuuUGCU-----------UGuGCGGGACGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 93029 0.66 0.86428
Target:  5'- cGCGGGA--AGCG-GCCCccgGCGCCUGg -3'
miRNA:   3'- uCGCUUUgcUUGUgCGGGa--CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 131830 0.66 0.86428
Target:  5'- cGGCGGcAGCG---GCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCU-UUGCuugUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 6853 0.66 0.86428
Target:  5'- gGGgGggGCGGcgcuugcuuugGCcCGCCUUGCGCUUu -3'
miRNA:   3'- -UCgCuuUGCU-----------UGuGCGGGACGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 29017 0.66 0.86428
Target:  5'- cGGCGGcAGCG---GCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCU-UUGCuugUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 44600 0.66 0.86428
Target:  5'- cGCGcgGCGAGgGcCGCCaggGCGCCg- -3'
miRNA:   3'- uCGCuuUGCUUgU-GCGGga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 35504 0.66 0.86428
Target:  5'- cGCGGAggccACGGcGCGCGCCgaGCGCa-- -3'
miRNA:   3'- uCGCUU----UGCU-UGUGCGGgaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 41171 0.66 0.86428
Target:  5'- cGCGgcGCGGGCGCGCgUguuaagaggGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGUGCGgGa--------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 42790 0.66 0.86428
Target:  5'- aAGCcucGCG-GCGcCGCCCUGUGCCg- -3'
miRNA:   3'- -UCGcuuUGCuUGU-GCGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 53100 0.66 0.86428
Target:  5'- cGGCGggGCGGcgGCcCGCCa-GCGgCUGc -3'
miRNA:   3'- -UCGCuuUGCU--UGuGCGGgaCGCgGAC- -5'
6357 3' -56.1 NC_001847.1 + 12904 0.66 0.86428
Target:  5'- cGCGGAA-GcGCGCGCCgUGcCGCCg- -3'
miRNA:   3'- uCGCUUUgCuUGUGCGGgAC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 98375 0.66 0.86428
Target:  5'- cGCGucGCGGGCGCGCUCgaucuccagGCGCa-- -3'
miRNA:   3'- uCGCuuUGCUUGUGCGGGa--------CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 105450 0.66 0.86428
Target:  5'- cGCGcccAAGCGAucaGCGCCaucagCUGCGCCa- -3'
miRNA:   3'- uCGC---UUUGCUug-UGCGG-----GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 60453 0.66 0.86275
Target:  5'- cGGCGcugcccccguCGGGCGCGUCCgccaugGCGCCg- -3'
miRNA:   3'- -UCGCuuu-------GCUUGUGCGGGa-----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 129715 0.66 0.861982
Target:  5'- gAGCGAGACGcgcggcuaaccGcgcucucacugagcGCGCGgCCUGUGCCg- -3'
miRNA:   3'- -UCGCUUUGC-----------U--------------UGUGCgGGACGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.