miRNA display CGI


Results 81 - 100 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 37554 0.66 0.859665
Target:  5'- gGGCGGcccuucggaagacgcGGCGGcGCugGCCgCUGCGgCUGc -3'
miRNA:   3'- -UCGCU---------------UUGCU-UGugCGG-GACGCgGAC- -5'
6357 3' -56.1 NC_001847.1 + 93539 0.66 0.856546
Target:  5'- cGGCGGAGCaGAACaACGCCacgCUG-GCCUc -3'
miRNA:   3'- -UCGCUUUG-CUUG-UGCGG---GACgCGGAc -5'
6357 3' -56.1 NC_001847.1 + 91589 0.66 0.856546
Target:  5'- cGGCGAAGCGcGCAaa-CCgcgGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCuUGUgcgGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 120449 0.66 0.856546
Target:  5'- cGCGucGCGAACgACGCCUUucGCuccuGCCUGc -3'
miRNA:   3'- uCGCuuUGCUUG-UGCGGGA--CG----CGGAC- -5'
6357 3' -56.1 NC_001847.1 + 102257 0.66 0.856546
Target:  5'- cGCGcgGCGcGCACcguGCCCUccaGCGCCa- -3'
miRNA:   3'- uCGCuuUGCuUGUG---CGGGA---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 89437 0.66 0.856546
Target:  5'- cGGCGGAGCuGAGC-CGCCCaccgGagGCCUa -3'
miRNA:   3'- -UCGCUUUG-CUUGuGCGGGa---Cg-CGGAc -5'
6357 3' -56.1 NC_001847.1 + 19820 0.66 0.856546
Target:  5'- uGGCGggGCGGcagaaaaagaACACagucaGCCCcuccgGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU----------UGUG-----CGGGa----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 80546 0.66 0.856546
Target:  5'- -uCGgcGCGGGCGCGCgCCgccaGCGCCg- -3'
miRNA:   3'- ucGCuuUGCUUGUGCG-GGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 73870 0.66 0.856546
Target:  5'- cGGCGgcGCG---GCGCCCgcgcGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuugUGCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 118241 0.66 0.856546
Target:  5'- gAGCGGccCGGgcugguaaaccuGCGCGgCgUGCGCCUGc -3'
miRNA:   3'- -UCGCUuuGCU------------UGUGCgGgACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 120701 0.66 0.856546
Target:  5'- cAGCGcgGCc-GCGCGCUCgGCGCCa- -3'
miRNA:   3'- -UCGCuuUGcuUGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 43350 0.66 0.856546
Target:  5'- cGGCGAcgccGACGAAgcgucCGCGgCCaGCGCCg- -3'
miRNA:   3'- -UCGCU----UUGCUU-----GUGCgGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 96525 0.66 0.856546
Target:  5'- gGGCGGcAACGGAC-CGCgC-GCGCCg- -3'
miRNA:   3'- -UCGCU-UUGCUUGuGCGgGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 33647 0.66 0.856546
Target:  5'- cGCGAGGCGcGCGCGCgCgUG-GCCg- -3'
miRNA:   3'- uCGCUUUGCuUGUGCG-GgACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 29943 0.66 0.856546
Target:  5'- gGGCGGuugugucuucuuAGCGAGCAUGUaCCUGCacGCCg- -3'
miRNA:   3'- -UCGCU------------UUGCUUGUGCG-GGACG--CGGac -5'
6357 3' -56.1 NC_001847.1 + 59206 0.66 0.856546
Target:  5'- -cCGAGcCGucCGCGCCgUGCGCUUGc -3'
miRNA:   3'- ucGCUUuGCuuGUGCGGgACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 61185 0.66 0.856546
Target:  5'- cGGCGAGgaaaagguuuuGCGcGCGCGCCagguacGCGCCg- -3'
miRNA:   3'- -UCGCUU-----------UGCuUGUGCGGga----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 77699 0.66 0.856546
Target:  5'- aGGCGGcguGCGcGCGCGCgCUggugcGCGCUUGg -3'
miRNA:   3'- -UCGCUu--UGCuUGUGCGgGA-----CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 116650 0.66 0.856546
Target:  5'- cGGCaGccGCGGGCACGCugguggCCUGCGUgUGg -3'
miRNA:   3'- -UCG-CuuUGCUUGUGCG------GGACGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 37130 0.66 0.856546
Target:  5'- -cUGggGCGcGCACGCCCaGCggGCCUu -3'
miRNA:   3'- ucGCuuUGCuUGUGCGGGaCG--CGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.