miRNA display CGI


Results 41 - 60 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 12080 0.68 0.778485
Target:  5'- cGCGGAGCGccGCGgGUCCgGCGCCc- -3'
miRNA:   3'- uCGCUUUGCu-UGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 12904 0.66 0.86428
Target:  5'- cGCGGAA-GcGCGCGCCgUGcCGCCg- -3'
miRNA:   3'- uCGCUUUgCuUGUGCGGgAC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 12965 0.67 0.8149
Target:  5'- cGCGcGAUGAGCAgGCCaugGCGCUg- -3'
miRNA:   3'- uCGCuUUGCUUGUgCGGga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 13374 0.72 0.525652
Target:  5'- cGCGAAcgGCGcGCACGUCCgggcGCGCCg- -3'
miRNA:   3'- uCGCUU--UGCuUGUGCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 13402 0.7 0.678366
Target:  5'- cGCGGgcccugggagaaaGACGGGCGCGCCagcgcGCGCCg- -3'
miRNA:   3'- uCGCU-------------UUGCUUGUGCGGga---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 14132 0.69 0.720031
Target:  5'- gGGCGA--UGGGCgGgGCCC-GCGCCUGg -3'
miRNA:   3'- -UCGCUuuGCUUG-UgCGGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 14811 0.74 0.44869
Target:  5'- cGGCGGAGCuGcGCgGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGCUUUG-CuUG-UGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 15045 0.67 0.805133
Target:  5'- gGGCGAGcuguGCGAGCGCcaucugaccggcgGCCCggggauCGCCUGc -3'
miRNA:   3'- -UCGCUU----UGCUUGUG-------------CGGGac----GCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 15624 0.68 0.759436
Target:  5'- cGGCGGAACG-ACGCcCCCgugGCGCaUGa -3'
miRNA:   3'- -UCGCUUUGCuUGUGcGGGa--CGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 16184 0.66 0.879101
Target:  5'- cGCGGAccccgaaucgGAACugGCCC-GCGCCa- -3'
miRNA:   3'- uCGCUUug--------CUUGugCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 16662 0.67 0.840461
Target:  5'- uGGCGgcGCGGGCGCGUCgcgcagccuuggCUGCGCg-- -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGG------------GACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 16662 0.67 0.840461
Target:  5'- cGCGccuACaGGCGCGCCCgggccuUGCGCCg- -3'
miRNA:   3'- uCGCuu-UGcUUGUGCGGG------ACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 17313 0.68 0.796997
Target:  5'- cGGCGgcGCGGcACACGgCCgcguagccgGCGCCUu -3'
miRNA:   3'- -UCGCuuUGCU-UGUGCgGGa--------CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 17390 0.67 0.8149
Target:  5'- uGCGucguGACGGuCACGaCCUUGCGCUg- -3'
miRNA:   3'- uCGCu---UUGCUuGUGC-GGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 18451 0.66 0.86428
Target:  5'- cAGCcguGCGGugcCGCGCCCgcaGCGCCg- -3'
miRNA:   3'- -UCGcuuUGCUu--GUGCGGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 18523 0.72 0.565987
Target:  5'- cAGCGcuGCGGGCGCGCCgCcguccGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGG-Ga----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 18962 0.69 0.739926
Target:  5'- gGGCGGcGACGAccaGCGCGgCCgcgGCGCCc- -3'
miRNA:   3'- -UCGCU-UUGCU---UGUGCgGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 18989 0.67 0.848604
Target:  5'- uGCGAAaguuuagcgcACGGGCgGCGCCCUcggccucuucGCGCgUGa -3'
miRNA:   3'- uCGCUU----------UGCUUG-UGCGGGA----------CGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 19002 0.67 0.840461
Target:  5'- cAGCGccuCGGgccGCGCGCCCcaGCGCCc- -3'
miRNA:   3'- -UCGCuuuGCU---UGUGCGGGa-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 19820 0.66 0.856546
Target:  5'- uGGCGggGCGGcagaaaaagaACACagucaGCCCcuccgGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU----------UGUG-----CGGGa----CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.