miRNA display CGI


Results 61 - 80 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 21120 0.67 0.847798
Target:  5'- cGCGAGuaaagGCuGucuaauuuuuuccGCACGCCC-GCGCCUGu -3'
miRNA:   3'- uCGCUU-----UGcU-------------UGUGCGGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 22114 0.85 0.093637
Target:  5'- gGGCGAcAGCGGGCGCGCCCUGgGCCc- -3'
miRNA:   3'- -UCGCU-UUGCUUGUGCGGGACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 22350 0.72 0.555816
Target:  5'- uGGCGAGGCGca-GCGCCUcgggGCGCCa- -3'
miRNA:   3'- -UCGCUUUGCuugUGCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 23776 0.67 0.848604
Target:  5'- cAGCGGAugcccgggcGCGAGguCGCCCaGCGCg-- -3'
miRNA:   3'- -UCGCUU---------UGCUUguGCGGGaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 24090 0.72 0.555816
Target:  5'- cAGCGAGAgGAcCACGCCCUcGUaGCCg- -3'
miRNA:   3'- -UCGCUUUgCUuGUGCGGGA-CG-CGGac -5'
6357 3' -56.1 NC_001847.1 + 25991 0.66 0.879101
Target:  5'- gGGCGGgcgGGCGGGCGCGCag-GCGCg-- -3'
miRNA:   3'- -UCGCU---UUGCUUGUGCGggaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 26761 0.68 0.749734
Target:  5'- cGCGGGugcGCGGccuggucagugcGCGCGCCCUccugcGCGCCg- -3'
miRNA:   3'- uCGCUU---UGCU------------UGUGCGGGA-----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 27200 0.7 0.658797
Target:  5'- cAGCGuuaGGACGGGCGCGCCgggGCGCUc- -3'
miRNA:   3'- -UCGC---UUUGCUUGUGCGGga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 27523 0.67 0.815778
Target:  5'- cGGCGGcGGCGGGgACGCCCgagaacggcggcgcgGCGgCUGg -3'
miRNA:   3'- -UCGCU-UUGCUUgUGCGGGa--------------CGCgGAC- -5'
6357 3' -56.1 NC_001847.1 + 27703 0.72 0.555816
Target:  5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 27834 0.7 0.689635
Target:  5'- cGCGGAgaucgGCGAGgACGCCg-GCGCCa- -3'
miRNA:   3'- uCGCUU-----UGCUUgUGCGGgaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 27927 0.66 0.8718
Target:  5'- cGCGGAggacGCGGACAgG-CCUGgGCCg- -3'
miRNA:   3'- uCGCUU----UGCUUGUgCgGGACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 28315 0.73 0.496126
Target:  5'- cGCGAGagGCGGGCGCcggGCCCgGCGCCc- -3'
miRNA:   3'- uCGCUU--UGCUUGUG---CGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 28345 0.7 0.66911
Target:  5'- cGCGggGCc-GCGCGCCCgggcccccgGCGCCc- -3'
miRNA:   3'- uCGCuuUGcuUGUGCGGGa--------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 28407 0.67 0.848604
Target:  5'- cGGCGccagcGCGGGCGCGCaaCCgGCGCCc- -3'
miRNA:   3'- -UCGCuu---UGCUUGUGCG--GGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 28417 0.67 0.823601
Target:  5'- aGGCGggGCuua-GCGCCCUGgCGCa-- -3'
miRNA:   3'- -UCGCuuUGcuugUGCGGGAC-GCGgac -5'
6357 3' -56.1 NC_001847.1 + 28605 0.67 0.840461
Target:  5'- cGCGAGGCGGccGCGCGCUacgcgGCgGCCg- -3'
miRNA:   3'- uCGCUUUGCU--UGUGCGGga---CG-CGGac -5'
6357 3' -56.1 NC_001847.1 + 28745 0.71 0.628797
Target:  5'- cGCGAAGCucGCGgGCCCggaccugcagcuggcGCGCCUGc -3'
miRNA:   3'- uCGCUUUGcuUGUgCGGGa--------------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 29017 0.66 0.86428
Target:  5'- cGGCGGcAGCG---GCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCU-UUGCuugUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 29120 0.69 0.73894
Target:  5'- cGCGAGcggcugcGCGAGCugGCggaccgCUGCGCCg- -3'
miRNA:   3'- uCGCUU-------UGCUUGugCGg-----GACGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.