miRNA display CGI


Results 81 - 100 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 29165 0.68 0.769023
Target:  5'- cGCGAGGCGcugGAgGCgGCCCgccGCGCCg- -3'
miRNA:   3'- uCGCUUUGC---UUgUG-CGGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 29800 0.68 0.749734
Target:  5'- uGUGGAcGCGAGCGC-CCCgGCGCCc- -3'
miRNA:   3'- uCGCUU-UGCUUGUGcGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 29890 0.71 0.627761
Target:  5'- cGGCGAGGCG-GCG-GCCCUGCcgGCCg- -3'
miRNA:   3'- -UCGCUUUGCuUGUgCGGGACG--CGGac -5'
6357 3' -56.1 NC_001847.1 + 29943 0.66 0.856546
Target:  5'- gGGCGGuugugucuucuuAGCGAGCAUGUaCCUGCacGCCg- -3'
miRNA:   3'- -UCGCU------------UUGCUUGUGCG-GGACG--CGGac -5'
6357 3' -56.1 NC_001847.1 + 30141 0.78 0.274284
Target:  5'- cGCGAcGCGcGGCGCGCCgUGCGcCCUGg -3'
miRNA:   3'- uCGCUuUGC-UUGUGCGGgACGC-GGAC- -5'
6357 3' -56.1 NC_001847.1 + 30384 0.68 0.769023
Target:  5'- cGGCGAgGACGAGCGCcggcgGCCCgaguggccgccGCGCCg- -3'
miRNA:   3'- -UCGCU-UUGCUUGUG-----CGGGa----------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 30694 0.71 0.627761
Target:  5'- cGGgGAGACGAGgGCaGCCCgGCGCUccUGg -3'
miRNA:   3'- -UCgCUUUGCUUgUG-CGGGaCGCGG--AC- -5'
6357 3' -56.1 NC_001847.1 + 30735 0.7 0.689635
Target:  5'- uGCGccGCGcGCugGCCCgagcgGCGCgCUGg -3'
miRNA:   3'- uCGCuuUGCuUGugCGGGa----CGCG-GAC- -5'
6357 3' -56.1 NC_001847.1 + 30994 0.67 0.848604
Target:  5'- cAGCGAAGCGGcacCAUGUCCgGCGUUg- -3'
miRNA:   3'- -UCGCUUUGCUu--GUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 31040 0.67 0.832124
Target:  5'- gGGCGAGGCGGcCA-GCCaCcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUuGUgCGG-GaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 31234 0.66 0.879101
Target:  5'- cGCGaAAGCgGGGCGCGCCCggaaaUGUGCUc- -3'
miRNA:   3'- uCGC-UUUG-CUUGUGCGGG-----ACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 31736 0.67 0.806029
Target:  5'- uGCGGAGCGGcCGCGgagggccaggaCCCgGCGCCg- -3'
miRNA:   3'- uCGCUUUGCUuGUGC-----------GGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 32031 0.67 0.806029
Target:  5'- cGGCGggGCGcgggGACgGCGCCC-GCGCg-- -3'
miRNA:   3'- -UCGCuuUGC----UUG-UGCGGGaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 32248 0.7 0.66911
Target:  5'- gGGCGGAGCccaGAGCGgGCCCgggcccgccGCGCCg- -3'
miRNA:   3'- -UCGCUUUG---CUUGUgCGGGa--------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 32380 0.7 0.679392
Target:  5'- cGGCGucGCGGGCgucGCGCCUUGCGUg-- -3'
miRNA:   3'- -UCGCuuUGCUUG---UGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 32539 0.68 0.759436
Target:  5'- aGGCGAuGCGcGCGCaGCCCUcgGCGCUn- -3'
miRNA:   3'- -UCGCUuUGCuUGUG-CGGGA--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 32567 0.71 0.627761
Target:  5'- gGGCGAccuGGCGGACGC-CaagCUGCGCCUa -3'
miRNA:   3'- -UCGCU---UUGCUUGUGcGg--GACGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 32632 0.7 0.688613
Target:  5'- cGGCGcgGCGcGCGCucuGCCCUGCcugcacgccuucuGCCUGg -3'
miRNA:   3'- -UCGCuuUGCuUGUG---CGGGACG-------------CGGAC- -5'
6357 3' -56.1 NC_001847.1 + 32675 0.67 0.832124
Target:  5'- cGGCGgcGCGGGCcCGCUCgagcugugcgGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUGuGCGGGa---------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 33149 0.7 0.66911
Target:  5'- cGCGugGCGAGCGCGgCggUUGCGCCg- -3'
miRNA:   3'- uCGCuuUGCUUGUGCgG--GACGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.