miRNA display CGI


Results 101 - 120 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 33510 0.69 0.720031
Target:  5'- gGGCGGcGGCGGGCGcCGCCgCggagGCGCCg- -3'
miRNA:   3'- -UCGCU-UUGCUUGU-GCGG-Ga---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 33587 0.72 0.525652
Target:  5'- cGCGguGCcGACgACGUCCUGCGCCa- -3'
miRNA:   3'- uCGCuuUGcUUG-UGCGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 33647 0.66 0.856546
Target:  5'- cGCGAGGCGcGCGCGCgCgUG-GCCg- -3'
miRNA:   3'- uCGCUUUGCuUGUGCG-GgACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 33729 0.7 0.689635
Target:  5'- uGGgGGAGCG-ACGCGCagagcuguaCCaGCGCCUGg -3'
miRNA:   3'- -UCgCUUUGCuUGUGCG---------GGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 33793 0.69 0.699829
Target:  5'- cGCGGGgcuGCGcGCgGCGCCCgGCGCgCUGg -3'
miRNA:   3'- uCGCUU---UGCuUG-UGCGGGaCGCG-GAC- -5'
6357 3' -56.1 NC_001847.1 + 33946 0.68 0.787813
Target:  5'- cGCGAGGCgcuggagaacccGAGCGCGCUg-GCGCCg- -3'
miRNA:   3'- uCGCUUUG------------CUUGUGCGGgaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 34030 0.71 0.607074
Target:  5'- cAGUGAuagaccugacGGCGAACGCGCCCgccCGCCc- -3'
miRNA:   3'- -UCGCU----------UUGCUUGUGCGGGac-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 34308 0.72 0.555816
Target:  5'- cAGCGAGGCuucGGGCGCG-CUUGCGUCUGc -3'
miRNA:   3'- -UCGCUUUG---CUUGUGCgGGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 34506 0.7 0.648462
Target:  5'- gAGCGAGgccgacGCGGACgGCGCCggcgaUGCGCCg- -3'
miRNA:   3'- -UCGCUU------UGCUUG-UGCGGg----ACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 34607 0.68 0.776603
Target:  5'- uGGCGcgGCG-GCGCGCCgaggaaguccgGCGCCUGc -3'
miRNA:   3'- -UCGCuuUGCuUGUGCGGga---------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 35202 0.7 0.66911
Target:  5'- gAGCGcgcGCGGcuGgGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGCuu-UGCU--UgUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 35206 0.68 0.758471
Target:  5'- aAGUGGGAUGGACugGgcgggguCCgUUGCGCCUGc -3'
miRNA:   3'- -UCGCUUUGCUUGugC-------GG-GACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 35306 0.66 0.879101
Target:  5'- cGCcGAGCG-GCGCGCgCUggaagcgggcgUGCGCCUGg -3'
miRNA:   3'- uCGcUUUGCuUGUGCG-GG-----------ACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 35351 0.69 0.720031
Target:  5'- gAGCGAGgcucugaucGCGAGCGCGCUg-GCGCagCUGg -3'
miRNA:   3'- -UCGCUU---------UGCUUGUGCGGgaCGCG--GAC- -5'
6357 3' -56.1 NC_001847.1 + 35504 0.66 0.86428
Target:  5'- cGCGGAggccACGGcGCGCGCCgaGCGCa-- -3'
miRNA:   3'- uCGCUU----UGCU-UGUGCGGgaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 35828 0.67 0.840461
Target:  5'- uGCGGAGCGcAUcgACGCgCUGCGCgagCUGa -3'
miRNA:   3'- uCGCUUUGCuUG--UGCGgGACGCG---GAC- -5'
6357 3' -56.1 NC_001847.1 + 35918 0.77 0.287631
Target:  5'- gAGCGGcauggaccGGCGGucGCGCGCgCUUGCGCCUGg -3'
miRNA:   3'- -UCGCU--------UUGCU--UGUGCG-GGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 35963 0.66 0.8718
Target:  5'- cGCGAGgaccACGAGgGCGCCaagGCGCg-- -3'
miRNA:   3'- uCGCUU----UGCUUgUGCGGga-CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 36096 0.75 0.386751
Target:  5'- uGGCGGAGCGcggcGACGCGCUggGCGCCUu -3'
miRNA:   3'- -UCGCUUUGC----UUGUGCGGgaCGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 36163 0.66 0.871058
Target:  5'- cGGCGAGACGuACugggccaaccccuACGCCgUgGCGCgUGg -3'
miRNA:   3'- -UCGCUUUGCuUG-------------UGCGGgA-CGCGgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.