miRNA display CGI


Results 41 - 60 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 122679 0.66 0.886176
Target:  5'- cGCGGGaagccGCGGaggcuccgccGCGCGCgCUGUGCCg- -3'
miRNA:   3'- uCGCUU-----UGCU----------UGUGCGgGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 122019 0.67 0.848604
Target:  5'- aGGCGgcGCG-GCGcCGCCCgcGCGCCc- -3'
miRNA:   3'- -UCGCuuUGCuUGU-GCGGGa-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 120928 0.69 0.709964
Target:  5'- gGGCGggGCGGGCGCGCgg-GCGUgguggCUGa -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGggaCGCG-----GAC- -5'
6357 3' -56.1 NC_001847.1 + 120733 0.67 0.823601
Target:  5'- cGCGAcccgcuGCGAGCGgGgCCUcGCGCCa- -3'
miRNA:   3'- uCGCUu-----UGCUUGUgCgGGA-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 120701 0.66 0.856546
Target:  5'- cAGCGcgGCc-GCGCGCUCgGCGCCa- -3'
miRNA:   3'- -UCGCuuUGcuUGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 120449 0.66 0.856546
Target:  5'- cGCGucGCGAACgACGCCUUucGCuccuGCCUGc -3'
miRNA:   3'- uCGCuuUGCUUG-UGCGGGA--CG----CGGAC- -5'
6357 3' -56.1 NC_001847.1 + 120090 0.69 0.720031
Target:  5'- cGCGggGCGGGagauaaaGCGCCCgcGCGUCg- -3'
miRNA:   3'- uCGCuuUGCUUg------UGCGGGa-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 119939 0.7 0.66911
Target:  5'- cGCGGcGACGAuggcucccguCACGCCCUGCGUa-- -3'
miRNA:   3'- uCGCU-UUGCUu---------GUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 119674 0.69 0.739926
Target:  5'- uAGC---GCGucuGCGCGCCgUGCGCCg- -3'
miRNA:   3'- -UCGcuuUGCu--UGUGCGGgACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 119591 0.69 0.730022
Target:  5'- cGCGGcccGACGGccgcGCGCGCaCCgGCGCCa- -3'
miRNA:   3'- uCGCU---UUGCU----UGUGCG-GGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 119425 0.68 0.787813
Target:  5'- cGgGAuuACGAGCAaaagaagGUUCUGCGCCUGa -3'
miRNA:   3'- uCgCUu-UGCUUGUg------CGGGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 119382 0.71 0.627761
Target:  5'- cGGCGaAAGCGGGC-CGCCC-GCGUCg- -3'
miRNA:   3'- -UCGC-UUUGCUUGuGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 119069 0.66 0.886176
Target:  5'- cAGCGuacUGGAgGCGCCCagcagagGCGCCg- -3'
miRNA:   3'- -UCGCuuuGCUUgUGCGGGa------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 118671 0.69 0.739926
Target:  5'- aAGaGAggUGucCGCGCUCUGCGCCg- -3'
miRNA:   3'- -UCgCUuuGCuuGUGCGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 118526 0.66 0.886176
Target:  5'- cGCGu-ACGAGCcgAUGCUCaGCGUCUGa -3'
miRNA:   3'- uCGCuuUGCUUG--UGCGGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 118480 0.69 0.730022
Target:  5'- aGGCu--GCGcGACGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGcuuUGC-UUGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 118241 0.66 0.856546
Target:  5'- gAGCGGccCGGgcugguaaaccuGCGCGgCgUGCGCCUGc -3'
miRNA:   3'- -UCGCUuuGCU------------UGUGCgGgACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 117452 0.66 0.886176
Target:  5'- cGGCGugGCcGACaACGCCaCUggcggugcGCGCCUGg -3'
miRNA:   3'- -UCGCuuUGcUUG-UGCGG-GA--------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 116765 0.69 0.709964
Target:  5'- cGCGggGCcuGCugGgUCUGCGCCg- -3'
miRNA:   3'- uCGCuuUGcuUGugCgGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 116650 0.66 0.856546
Target:  5'- cGGCaGccGCGGGCACGCugguggCCUGCGUgUGg -3'
miRNA:   3'- -UCG-CuuUGCUUGUGCG------GGACGCGgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.