miRNA display CGI


Results 61 - 80 of 464 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 116615 0.72 0.525652
Target:  5'- cGGCGcGGACGGcgGCGCGCCCgcaGCGCUg- -3'
miRNA:   3'- -UCGC-UUUGCU--UGUGCGGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 116136 0.68 0.787813
Target:  5'- cGCGAAGaggccgaGGGCGcCGCCCgUGCGCUa- -3'
miRNA:   3'- uCGCUUUg------CUUGU-GCGGG-ACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 115691 0.7 0.648462
Target:  5'- cGGCGGAGCG-GCugGCCCggcagcggGCGCg-- -3'
miRNA:   3'- -UCGCUUUGCuUGugCGGGa-------CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 114945 0.67 0.806029
Target:  5'- uGGCGggGCgGGGCGcCGCCCcGCgGUCUa -3'
miRNA:   3'- -UCGCuuUG-CUUGU-GCGGGaCG-CGGAc -5'
6357 3' -56.1 NC_001847.1 + 113783 0.67 0.843742
Target:  5'- aGGCGGccCGAGC-CGCCgacggcgcgcaucguCUGCGCCa- -3'
miRNA:   3'- -UCGCUuuGCUUGuGCGG---------------GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 113712 0.68 0.769023
Target:  5'- uGCGGGACGGgguacucguACGCGCCCaGCaCCUc -3'
miRNA:   3'- uCGCUUUGCU---------UGUGCGGGaCGcGGAc -5'
6357 3' -56.1 NC_001847.1 + 113510 0.67 0.848604
Target:  5'- cGCGcc-CGGGCGCgGCCC-GCGCCg- -3'
miRNA:   3'- uCGCuuuGCUUGUG-CGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 113027 0.66 0.886871
Target:  5'- gGGCcca--GGGCGCGCCCgcugucgcccccggcGCGCCUGc -3'
miRNA:   3'- -UCGcuuugCUUGUGCGGGa--------------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 112858 0.66 0.855761
Target:  5'- cGCGuucgucACGGccgacacGCGCGCgCUGCGCCg- -3'
miRNA:   3'- uCGCuu----UGCU-------UGUGCGgGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 112742 0.69 0.737953
Target:  5'- cGCGGA-CGAGCACGCUCgccgcggcccggGCGCUUc -3'
miRNA:   3'- uCGCUUuGCUUGUGCGGGa-----------CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 112555 0.68 0.778485
Target:  5'- cGCGAc-CGGGCGgGCCCUGCcCCg- -3'
miRNA:   3'- uCGCUuuGCUUGUgCGGGACGcGGac -5'
6357 3' -56.1 NC_001847.1 + 112514 0.72 0.555816
Target:  5'- cGCccucccCGGACGCGCCCUGCGCg-- -3'
miRNA:   3'- uCGcuuu--GCUUGUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 112097 0.66 0.8718
Target:  5'- cGGCGcaAggUGGACugGCUCgagcgGCGCgUGg -3'
miRNA:   3'- -UCGC--UuuGCUUGugCGGGa----CGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 110913 0.67 0.832124
Target:  5'- cGGCGGcugAACGuggagauCGCCgaGCGCCUGc -3'
miRNA:   3'- -UCGCU---UUGCuugu---GCGGgaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 109820 0.69 0.699829
Target:  5'- uGCGGGAgccggccuuUGGGCGCGCCCUcgucggcgaggGCGCCa- -3'
miRNA:   3'- uCGCUUU---------GCUUGUGCGGGA-----------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 109666 0.66 0.86428
Target:  5'- gGGgGggGCGGcgcuugcuuugGCcCGCCUUGCGCUUu -3'
miRNA:   3'- -UCgCuuUGCU-----------UGuGCGGGACGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 109615 0.7 0.658797
Target:  5'- cGCGGAGCcgguGCGCGCCaaccGCGCCUu -3'
miRNA:   3'- uCGCUUUGcu--UGUGCGGga--CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 109372 0.66 0.869567
Target:  5'- cGCGGAAUGGGCGCagcugggcugcgguGCCgUGcCGCCg- -3'
miRNA:   3'- uCGCUUUGCUUGUG--------------CGGgAC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 108043 0.68 0.778485
Target:  5'- cGGCGggGCGcGCGCgGCaaaggguuugCCUGCGUCUc -3'
miRNA:   3'- -UCGCuuUGCuUGUG-CG----------GGACGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 107190 0.66 0.8718
Target:  5'- cGCGAccGCGAGCGCGC---GCGCCg- -3'
miRNA:   3'- uCGCUu-UGCUUGUGCGggaCGCGGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.