miRNA display CGI


Results 81 - 100 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 106819 0.69 0.709964
Target:  5'- cGCGggGCGc-CGgGCCCgGCGCCc- -3'
miRNA:   3'- uCGCuuUGCuuGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 106725 0.7 0.638114
Target:  5'- cAGCGcGGGCGccgguuGCGCGCCCgcgcugGCGCCg- -3'
miRNA:   3'- -UCGC-UUUGCu-----UGUGCGGGa-----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 106123 0.67 0.823601
Target:  5'- gAGCGcgGCGcGgGCGCCgCUGcCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuUgUGCGG-GAC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 105972 0.7 0.638114
Target:  5'- cGGCGcgGCGGGC-CGCCUccaGCGCCUc -3'
miRNA:   3'- -UCGCuuUGCUUGuGCGGGa--CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 105653 0.67 0.839636
Target:  5'- cGGCGGgcugaacAGCGcGCGCGCCa-GCGCCc- -3'
miRNA:   3'- -UCGCU-------UUGCuUGUGCGGgaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 105601 0.68 0.796997
Target:  5'- uGCGggG-GAACucgaGCGCCC-GCGCCg- -3'
miRNA:   3'- uCGCuuUgCUUG----UGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 105450 0.66 0.86428
Target:  5'- cGCGcccAAGCGAucaGCGCCaucagCUGCGCCa- -3'
miRNA:   3'- uCGC---UUUGCUug-UGCGG-----GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 104747 0.66 0.8718
Target:  5'- cGGCGGccAGCGccaGCGCCguCUGCGCCc- -3'
miRNA:   3'- -UCGCU--UUGCuugUGCGG--GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 104602 0.72 0.535643
Target:  5'- cGCGu--CGAgagcagcaGCACGCCCUGCGCg-- -3'
miRNA:   3'- uCGCuuuGCU--------UGUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 104380 0.67 0.848604
Target:  5'- cGCGAGgccagcACGGcGCGCGCCagcGCGCCg- -3'
miRNA:   3'- uCGCUU------UGCU-UGUGCGGga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 104345 0.68 0.749734
Target:  5'- cGGCGcgcGCGAAgGCGCCCgggccgaagacGCGCCg- -3'
miRNA:   3'- -UCGCuu-UGCUUgUGCGGGa----------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 104226 0.69 0.699829
Target:  5'- cGGCGgcACGGGCACcgcggugcgcggGCCCagGCGCgUGg -3'
miRNA:   3'- -UCGCuuUGCUUGUG------------CGGGa-CGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 104148 0.67 0.832124
Target:  5'- gAGCcccAGCGc-CGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGcu-UUGCuuGUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 103001 0.71 0.617412
Target:  5'- cGGCGugcGCGGGCgcggcgGCGCCCaGCGCCg- -3'
miRNA:   3'- -UCGCuu-UGCUUG------UGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 102875 0.67 0.806029
Target:  5'- cGCGGAcggcGCGAgccacGCACGCgUCUGCGUCa- -3'
miRNA:   3'- uCGCUU----UGCU-----UGUGCG-GGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 102510 0.67 0.832124
Target:  5'- aGGCaGGGCaGAGCGCGCgCC-GCGCCg- -3'
miRNA:   3'- -UCGcUUUG-CUUGUGCG-GGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 102459 0.66 0.870314
Target:  5'- cGGCGccgcacagcuCGAGCGgGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuu-------GCUUGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 102257 0.66 0.856546
Target:  5'- cGCGcgGCGcGCACcguGCCCUccaGCGCCa- -3'
miRNA:   3'- uCGCuuUGCuUGUG---CGGGA---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 101900 0.7 0.648462
Target:  5'- cGCGGcAGCGGAgGCGCCgCgGCGCCc- -3'
miRNA:   3'- uCGCU-UUGCUUgUGCGG-GaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 101824 0.67 0.823601
Target:  5'- cGCGAGGCcgucuucgGugUGCGCCgUUGCGCCUGc -3'
miRNA:   3'- uCGCUUUG--------CuuGUGCGG-GACGCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.