miRNA display CGI


Results 61 - 80 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 34308 0.72 0.555816
Target:  5'- cAGCGAGGCuucGGGCGCG-CUUGCGUCUGc -3'
miRNA:   3'- -UCGCUUUG---CUUGUGCgGGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 18523 0.72 0.565987
Target:  5'- cAGCGcuGCGGGCGCGCCgCcguccGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGG-Ga----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 94252 0.78 0.267799
Target:  5'- cGUGGAGCGGcuCGCGCCCUGCGUCc- -3'
miRNA:   3'- uCGCUUUGCUu-GUGCGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 122820 0.76 0.338344
Target:  5'- cAGCGAGccgGCGGGCGCGCCCaccgggcccGCGcCCUGg -3'
miRNA:   3'- -UCGCUU---UGCUUGUGCGGGa--------CGC-GGAC- -5'
6357 3' -56.1 NC_001847.1 + 36096 0.75 0.386751
Target:  5'- uGGCGGAGCGcggcGACGCGCUggGCGCCUu -3'
miRNA:   3'- -UCGCUUUGC----UUGUGCGGgaCGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 14811 0.74 0.44869
Target:  5'- cGGCGGAGCuGcGCgGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGCUUUG-CuUG-UGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 55350 0.73 0.496126
Target:  5'- cGGCGguGCuGAACGCGCCgCggGCGCCg- -3'
miRNA:   3'- -UCGCuuUG-CUUGUGCGG-Ga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 61895 0.73 0.505889
Target:  5'- cGCGcacggccuCGAGCGCGCCC-GCGCCg- -3'
miRNA:   3'- uCGCuuu-----GCUUGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 67291 0.72 0.535643
Target:  5'- cGCGucGCGAGCGCGCgCgccaGCGCCg- -3'
miRNA:   3'- uCGCuuUGCUUGUGCGgGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 59061 0.72 0.545699
Target:  5'- uGGUGAGGCGGcagcucggcugGCGCGCCCU-CGCCc- -3'
miRNA:   3'- -UCGCUUUGCU-----------UGUGCGGGAcGCGGac -5'
6357 3' -56.1 NC_001847.1 + 88943 0.69 0.720031
Target:  5'- uGCGcGACGGACACGCcgaCCUcuccGCGCCc- -3'
miRNA:   3'- uCGCuUUGCUUGUGCG---GGA----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 106819 0.69 0.709964
Target:  5'- cGCGggGCGc-CGgGCCCgGCGCCc- -3'
miRNA:   3'- uCGCuuUGCuuGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 82590 0.71 0.586463
Target:  5'- cGCGAAGCGcuCGCGgCg-GCGCCUGu -3'
miRNA:   3'- uCGCUUUGCuuGUGCgGgaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 30694 0.71 0.627761
Target:  5'- cGGgGAGACGAGgGCaGCCCgGCGCUccUGg -3'
miRNA:   3'- -UCgCUUUGCUUgUG-CGGGaCGCGG--AC- -5'
6357 3' -56.1 NC_001847.1 + 105972 0.7 0.638114
Target:  5'- cGGCGcgGCGGGC-CGCCUccaGCGCCUc -3'
miRNA:   3'- -UCGCuuUGCUUGuGCGGGa--CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 40863 0.7 0.648462
Target:  5'- -cCGAuuguCGGGCGCGCCCaaUGCGCgUGg -3'
miRNA:   3'- ucGCUuu--GCUUGUGCGGG--ACGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 135061 0.7 0.66911
Target:  5'- gGGCGGAGCccaGAGCGgGCCCgggcccgccGCGCCg- -3'
miRNA:   3'- -UCGCUUUG---CUUGUgCGGGa--------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 35202 0.7 0.66911
Target:  5'- gAGCGcgcGCGGcuGgGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGCuu-UGCU--UgUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 33793 0.69 0.699829
Target:  5'- cGCGGGgcuGCGcGCgGCGCCCgGCGCgCUGg -3'
miRNA:   3'- uCGCUU---UGCuUG-UGCGGGaCGCG-GAC- -5'
6357 3' -56.1 NC_001847.1 + 53373 0.69 0.699829
Target:  5'- cGCGGGcaccGCGAGCGCGCCUgccgaguuuuuUGCGCg-- -3'
miRNA:   3'- uCGCUU----UGCUUGUGCGGG-----------ACGCGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.