Results 81 - 100 of 464 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 32567 | 0.71 | 0.627761 |
Target: 5'- gGGCGAccuGGCGGACGC-CaagCUGCGCCUa -3' miRNA: 3'- -UCGCU---UUGCUUGUGcGg--GACGCGGAc -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 4278 | 0.7 | 0.638114 |
Target: 5'- uGGCGGccACGAgGCGCGCgCCgGCGCCUu -3' miRNA: 3'- -UCGCUu-UGCU-UGUGCG-GGaCGCGGAc -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 106725 | 0.7 | 0.638114 |
Target: 5'- cAGCGcGGGCGccgguuGCGCGCCCgcgcugGCGCCg- -3' miRNA: 3'- -UCGC-UUUGCu-----UGUGCGGGa-----CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 3409 | 0.7 | 0.658797 |
Target: 5'- cAGCGGGA-GAGCA-GCCCggggGCGCCa- -3' miRNA: 3'- -UCGCUUUgCUUGUgCGGGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 33149 | 0.7 | 0.66911 |
Target: 5'- cGCGugGCGAGCGCGgCggUUGCGCCg- -3' miRNA: 3'- uCGCuuUGCUUGUGCgG--GACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 33793 | 0.69 | 0.699829 |
Target: 5'- cGCGGGgcuGCGcGCgGCGCCCgGCGCgCUGg -3' miRNA: 3'- uCGCUU---UGCuUG-UGCGGGaCGCG-GAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 53373 | 0.69 | 0.699829 |
Target: 5'- cGCGGGcaccGCGAGCGCGCCUgccgaguuuuuUGCGCg-- -3' miRNA: 3'- uCGCUU----UGCUUGUGCGGG-----------ACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 59061 | 0.72 | 0.545699 |
Target: 5'- uGGUGAGGCGGcagcucggcugGCGCGCCCU-CGCCc- -3' miRNA: 3'- -UCGCUUUGCU-----------UGUGCGGGAcGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 67291 | 0.72 | 0.535643 |
Target: 5'- cGCGucGCGAGCGCGCgCgccaGCGCCg- -3' miRNA: 3'- uCGCuuUGCUUGUGCGgGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 61895 | 0.73 | 0.505889 |
Target: 5'- cGCGcacggccuCGAGCGCGCCC-GCGCCg- -3' miRNA: 3'- uCGCuuu-----GCUUGUGCGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 1556 | 0.69 | 0.730022 |
Target: 5'- cGCccgccCGAuaGCGCGCCC-GCGCCUGu -3' miRNA: 3'- uCGcuuu-GCU--UGUGCGGGaCGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 54702 | 0.69 | 0.739926 |
Target: 5'- cAGCGgcGgGAGCugGaaaagaCCCUGCGCgUGa -3' miRNA: 3'- -UCGCuuUgCUUGugC------GGGACGCGgAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 29800 | 0.68 | 0.749734 |
Target: 5'- uGUGGAcGCGAGCGC-CCCgGCGCCc- -3' miRNA: 3'- uCGCUU-UGCUUGUGcGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 63069 | 0.68 | 0.749734 |
Target: 5'- gGGCGAGgcGCGGGCGCaGCuUCUGCGCg-- -3' miRNA: 3'- -UCGCUU--UGCUUGUG-CG-GGACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 10928 | 0.68 | 0.758471 |
Target: 5'- cGCGAGGCGAgccggcuggcgcgGCugGCCuUUGCGCauaUGu -3' miRNA: 3'- uCGCUUUGCU-------------UGugCGG-GACGCGg--AC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 94252 | 0.78 | 0.267799 |
Target: 5'- cGUGGAGCGGcuCGCGCCCUGCGUCc- -3' miRNA: 3'- uCGCUUUGCUu-GUGCGGGACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 122820 | 0.76 | 0.338344 |
Target: 5'- cAGCGAGccgGCGGGCGCGCCCaccgggcccGCGcCCUGg -3' miRNA: 3'- -UCGCUU---UGCUUGUGCGGGa--------CGC-GGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 36096 | 0.75 | 0.386751 |
Target: 5'- uGGCGGAGCGcggcGACGCGCUggGCGCCUu -3' miRNA: 3'- -UCGCUUUGC----UUGUGCGGgaCGCGGAc -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 14811 | 0.74 | 0.44869 |
Target: 5'- cGGCGGAGCuGcGCgGCGCCCUGCGCg-- -3' miRNA: 3'- -UCGCUUUG-CuUG-UGCGGGACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 55350 | 0.73 | 0.496126 |
Target: 5'- cGGCGguGCuGAACGCGCCgCggGCGCCg- -3' miRNA: 3'- -UCGCuuUG-CUUGUGCGG-Ga-CGCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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