miRNA display CGI


Results 101 - 120 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 54251 0.68 0.749734
Target:  5'- cAGCGcuGCGGugGCGCCCgacgaGCGgCUc -3'
miRNA:   3'- -UCGCuuUGCUugUGCGGGa----CGCgGAc -5'
6357 3' -56.1 NC_001847.1 + 83591 0.68 0.758471
Target:  5'- aAGCGcuGGCGAGCugcgccgACGCCUggGCGCCg- -3'
miRNA:   3'- -UCGCu-UUGCUUG-------UGCGGGa-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 81155 0.68 0.759436
Target:  5'- aAGCGA--CG-ACugGCCCgccGCGCCg- -3'
miRNA:   3'- -UCGCUuuGCuUGugCGGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 3890 0.68 0.769023
Target:  5'- cAGCGGAGCGAGCcguuGCGCgCggugGCGCg-- -3'
miRNA:   3'- -UCGCUUUGCUUG----UGCGgGa---CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 40382 0.68 0.77377
Target:  5'- aAGCGGggGGCGAcggccccggccaagACGCGCCCaaagcccgagugGUGCCUGc -3'
miRNA:   3'- -UCGCU--UUGCU--------------UGUGCGGGa-----------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 3409 0.7 0.658797
Target:  5'- cAGCGGGA-GAGCA-GCCCggggGCGCCa- -3'
miRNA:   3'- -UCGCUUUgCUUGUgCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 106725 0.7 0.638114
Target:  5'- cAGCGcGGGCGccgguuGCGCGCCCgcgcugGCGCCg- -3'
miRNA:   3'- -UCGC-UUUGCu-----UGUGCGGGa-----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 94252 0.78 0.267799
Target:  5'- cGUGGAGCGGcuCGCGCCCUGCGUCc- -3'
miRNA:   3'- uCGCUUUGCUu-GUGCGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 122820 0.76 0.338344
Target:  5'- cAGCGAGccgGCGGGCGCGCCCaccgggcccGCGcCCUGg -3'
miRNA:   3'- -UCGCUU---UGCUUGUGCGGGa--------CGC-GGAC- -5'
6357 3' -56.1 NC_001847.1 + 36096 0.75 0.386751
Target:  5'- uGGCGGAGCGcggcGACGCGCUggGCGCCUu -3'
miRNA:   3'- -UCGCUUUGC----UUGUGCGGgaCGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 14811 0.74 0.44869
Target:  5'- cGGCGGAGCuGcGCgGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGCUUUG-CuUG-UGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 55350 0.73 0.496126
Target:  5'- cGGCGguGCuGAACGCGCCgCggGCGCCg- -3'
miRNA:   3'- -UCGCuuUG-CUUGUGCGG-Ga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 61895 0.73 0.505889
Target:  5'- cGCGcacggccuCGAGCGCGCCC-GCGCCg- -3'
miRNA:   3'- uCGCuuu-----GCUUGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 67291 0.72 0.535643
Target:  5'- cGCGucGCGAGCGCGCgCgccaGCGCCg- -3'
miRNA:   3'- uCGCuuUGCUUGUGCGgGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 59061 0.72 0.545699
Target:  5'- uGGUGAGGCGGcagcucggcugGCGCGCCCU-CGCCc- -3'
miRNA:   3'- -UCGCUUUGCU-----------UGUGCGGGAcGCGGac -5'
6357 3' -56.1 NC_001847.1 + 125163 0.72 0.555816
Target:  5'- uGGCGAGGCGca-GCGCCUcgggGCGCCa- -3'
miRNA:   3'- -UCGCUUUGCuugUGCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 96560 0.72 0.565987
Target:  5'- cGCGcgcGCGGucuGCugGCCgUGUGCCUGg -3'
miRNA:   3'- uCGCuu-UGCU---UGugCGGgACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 51992 0.71 0.586463
Target:  5'- cGGCGcaucGCGGACGCGCCC-GaCGCCg- -3'
miRNA:   3'- -UCGCuu--UGCUUGUGCGGGaC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 32567 0.71 0.627761
Target:  5'- gGGCGAccuGGCGGACGC-CaagCUGCGCCUa -3'
miRNA:   3'- -UCGCU---UUGCUUGUGcGg--GACGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 4278 0.7 0.638114
Target:  5'- uGGCGGccACGAgGCGCGCgCCgGCGCCUu -3'
miRNA:   3'- -UCGCUu-UGCU-UGUGCG-GGaCGCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.