Results 41 - 60 of 464 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 100443 | 0.66 | 0.886176 |
Target: 5'- cAGCGcgGCGcGCAaGUCCUcGCGCCa- -3' miRNA: 3'- -UCGCuuUGCuUGUgCGGGA-CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 117452 | 0.66 | 0.886176 |
Target: 5'- cGGCGugGCcGACaACGCCaCUggcggugcGCGCCUGg -3' miRNA: 3'- -UCGCuuUGcUUG-UGCGG-GA--------CGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 119069 | 0.66 | 0.886176 |
Target: 5'- cAGCGuacUGGAgGCGCCCagcagagGCGCCg- -3' miRNA: 3'- -UCGCuuuGCUUgUGCGGGa------CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 64230 | 0.66 | 0.886176 |
Target: 5'- cGGCGgcGCGAAgcUGCCCgaGUGCCg- -3' miRNA: 3'- -UCGCuuUGCUUguGCGGGa-CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 122679 | 0.66 | 0.886176 |
Target: 5'- cGCGGGaagccGCGGaggcuccgccGCGCGCgCUGUGCCg- -3' miRNA: 3'- uCGCUU-----UGCU----------UGUGCGgGACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 85585 | 0.66 | 0.879101 |
Target: 5'- cGGCGccgucGACGGGCGCGCCggcaaagGCGCUa- -3' miRNA: 3'- -UCGCu----UUGCUUGUGCGGga-----CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 56490 | 0.66 | 0.879101 |
Target: 5'- cGGCGAcGCaGGCGCGCgCgaccGCGCCg- -3' miRNA: 3'- -UCGCUuUGcUUGUGCGgGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 73791 | 0.66 | 0.8718 |
Target: 5'- cGCGggGCGcuggaagcGCACGCCgUGguCGCCg- -3' miRNA: 3'- uCGCuuUGCu-------UGUGCGGgAC--GCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 112097 | 0.66 | 0.8718 |
Target: 5'- cGGCGcaAggUGGACugGCUCgagcgGCGCgUGg -3' miRNA: 3'- -UCGC--UuuGCUUGugCGGGa----CGCGgAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 56061 | 0.66 | 0.8718 |
Target: 5'- cGGCGc-ACGGgcacacgucgcACGCGCCCggcuccgGCGCCg- -3' miRNA: 3'- -UCGCuuUGCU-----------UGUGCGGGa------CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 57768 | 0.66 | 0.8718 |
Target: 5'- gAGCGAGAgCGG--GCGCCg-GCGCCa- -3' miRNA: 3'- -UCGCUUU-GCUugUGCGGgaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 104747 | 0.66 | 0.8718 |
Target: 5'- cGGCGGccAGCGccaGCGCCguCUGCGCCc- -3' miRNA: 3'- -UCGCU--UUGCuugUGCGG--GACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 78315 | 0.66 | 0.876207 |
Target: 5'- cGGCGcgGCGcGCGCGCCgCgggcccggcuuggGCGCCg- -3' miRNA: 3'- -UCGCuuUGCuUGUGCGG-Ga------------CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 65512 | 0.66 | 0.878381 |
Target: 5'- gGGCGgcGCGcGCAgugcggcCGCCCggccGCGCCg- -3' miRNA: 3'- -UCGCuuUGCuUGU-------GCGGGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 5937 | 0.66 | 0.879101 |
Target: 5'- cGGCGGacGACGGGCcCGCCCgcUGCuucuaGCCUc -3' miRNA: 3'- -UCGCU--UUGCUUGuGCGGG--ACG-----CGGAc -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 80877 | 0.66 | 0.879101 |
Target: 5'- gAGCGccuCGAGC-CGCUCgucggGCGCCa- -3' miRNA: 3'- -UCGCuuuGCUUGuGCGGGa----CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 25991 | 0.66 | 0.879101 |
Target: 5'- gGGCGGgcgGGCGGGCGCGCag-GCGCg-- -3' miRNA: 3'- -UCGCU---UUGCUUGUGCGggaCGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 99203 | 0.66 | 0.879101 |
Target: 5'- cGCGAGGCGGccGCGCGgCggcGCGCCg- -3' miRNA: 3'- uCGCUUUGCU--UGUGCgGga-CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 99753 | 0.66 | 0.879101 |
Target: 5'- cGGCaAAGCGAGCguggucaaaGCGCUccagCUGCGCCa- -3' miRNA: 3'- -UCGcUUUGCUUG---------UGCGG----GACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 101457 | 0.66 | 0.879101 |
Target: 5'- cGCGccGCGA--GCG-CCUGCGCCUc -3' miRNA: 3'- uCGCuuUGCUugUGCgGGACGCGGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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