miRNA display CGI


Results 1 - 20 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 76672 0.66 0.576098
Target:  5'- cGCCuuuuucgaCCCGUucACGCgCGCgGCGCugCGGCUGg -3'
miRNA:   3'- -CGG--------GGGCA--UGUG-GCGaCGCG--GCCGAU- -5'
6358 3' -63 NC_001847.1 + 128695 0.66 0.566318
Target:  5'- gGCCa-CGUACGCCGUcgccGCGCCGcCUAa -3'
miRNA:   3'- -CGGggGCAUGUGGCGa---CGCGGCcGAU- -5'
6358 3' -63 NC_001847.1 + 29085 0.66 0.566318
Target:  5'- cGCCCCUGc-CGCCgGCgagcacgGCGCgGGCg- -3'
miRNA:   3'- -CGGGGGCauGUGG-CGa------CGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 28534 0.66 0.566318
Target:  5'- cGCCgCCCG---GCCGCgUGCGCuuCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCG-ACGCG--GCCGau -5'
6358 3' -63 NC_001847.1 + 132555 0.66 0.566318
Target:  5'- gGCUCgCGUGCgGCCGCgGCGgCCGcGCa- -3'
miRNA:   3'- -CGGGgGCAUG-UGGCGaCGC-GGC-CGau -5'
6358 3' -63 NC_001847.1 + 49427 0.66 0.566318
Target:  5'- uGCCgCCGUGCACUG--GCGCUuguGGCUc -3'
miRNA:   3'- -CGGgGGCAUGUGGCgaCGCGG---CCGAu -5'
6358 3' -63 NC_001847.1 + 86956 0.66 0.557553
Target:  5'- gGCCgCCGgcgcggcacagcaggACGCCGCcgGCcggGCCGGCg- -3'
miRNA:   3'- -CGGgGGCa--------------UGUGGCGa-CG---CGGCCGau -5'
6358 3' -63 NC_001847.1 + 33679 0.66 0.556581
Target:  5'- cGCCgCCCuUGCgGCCGC-GCGgCGGCa- -3'
miRNA:   3'- -CGG-GGGcAUG-UGGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 131631 0.66 0.556581
Target:  5'- gGCCacggCCCGUACACgaaGCU-CGCgCGGCUc -3'
miRNA:   3'- -CGG----GGGCAUGUGg--CGAcGCG-GCCGAu -5'
6358 3' -63 NC_001847.1 + 132491 0.66 0.566318
Target:  5'- aGCCgCCGggcgaagGCGCCGCaagcgGCGaCGGCg- -3'
miRNA:   3'- -CGGgGGCa------UGUGGCGa----CGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 1723 0.66 0.576098
Target:  5'- aGCCgCCGccGCGCCGCgGCcaGCCGcGCg- -3'
miRNA:   3'- -CGGgGGCa-UGUGGCGaCG--CGGC-CGau -5'
6358 3' -63 NC_001847.1 + 31109 0.66 0.576098
Target:  5'- gGCCUgCGggcgGCGCgCGCUGgaGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUG-GCGACg-CGGCCGau -5'
6358 3' -63 NC_001847.1 + 100613 0.66 0.576098
Target:  5'- aGCgCCCGgcggGCGgCGCauCGCCGGCg- -3'
miRNA:   3'- -CGgGGGCa---UGUgGCGacGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 99147 0.66 0.576098
Target:  5'- cGCCCgCGgcCGCCuGCaGCGC-GGCUGc -3'
miRNA:   3'- -CGGGgGCauGUGG-CGaCGCGgCCGAU- -5'
6358 3' -63 NC_001847.1 + 2222 0.66 0.576098
Target:  5'- gGCCgCCa-GCGCCGCgGCGCUgGGCg- -3'
miRNA:   3'- -CGGgGGcaUGUGGCGaCGCGG-CCGau -5'
6358 3' -63 NC_001847.1 + 130721 0.66 0.576098
Target:  5'- uUCCCUGcgGCGCgCGCUGCcgccGUCGGCg- -3'
miRNA:   3'- cGGGGGCa-UGUG-GCGACG----CGGCCGau -5'
6358 3' -63 NC_001847.1 + 101140 0.66 0.576098
Target:  5'- uGCCCa---GCACCGCcGCGaaGGCUGg -3'
miRNA:   3'- -CGGGggcaUGUGGCGaCGCggCCGAU- -5'
6358 3' -63 NC_001847.1 + 96016 0.66 0.576098
Target:  5'- aGCCCCa--GCGCgGC-GCGUCGGCc- -3'
miRNA:   3'- -CGGGGgcaUGUGgCGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 95135 0.66 0.576098
Target:  5'- aGUCgCCG-GCGCUGCgcuuggggGUGCCGGCa- -3'
miRNA:   3'- -CGGgGGCaUGUGGCGa-------CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 82833 0.66 0.576098
Target:  5'- uUUCCCGguugGCGCCGCccGCGCCcGCg- -3'
miRNA:   3'- cGGGGGCa---UGUGGCGa-CGCGGcCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.