Results 1 - 20 of 449 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6358 | 3' | -63 | NC_001847.1 | + | 121340 | 1.07 | 0.000739 |
Target: 5'- gGCCCCCGUACACCGCUGCGCCGGCUAc -3' miRNA: 3'- -CGGGGGCAUGUGGCGACGCGGCCGAU- -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 2745 | 0.83 | 0.045722 |
Target: 5'- gGCCCCCGgcccgGCGCgGCgGCGCCGGCg- -3' miRNA: 3'- -CGGGGGCa----UGUGgCGaCGCGGCCGau -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 105558 | 0.83 | 0.045722 |
Target: 5'- gGCCCCCGgcccgGCGCgGCgGCGCCGGCg- -3' miRNA: 3'- -CGGGGGCa----UGUGgCGaCGCGGCCGau -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 133195 | 0.82 | 0.053524 |
Target: 5'- uGCCCUCGcuggaggagcucUGCGCCGC-GCGCCGGCUAa -3' miRNA: 3'- -CGGGGGC------------AUGUGGCGaCGCGGCCGAU- -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 52239 | 0.8 | 0.065961 |
Target: 5'- aGCCCCCGgGCGCCGC-GCGCCgcGGCUu -3' miRNA: 3'- -CGGGGGCaUGUGGCGaCGCGG--CCGAu -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 49798 | 0.78 | 0.094461 |
Target: 5'- cGCCCCCGggUGCGCUGCUgcugggcGCGCUGGCg- -3' miRNA: 3'- -CGGGGGC--AUGUGGCGA-------CGCGGCCGau -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 9059 | 0.78 | 0.104891 |
Target: 5'- cCCCCCGUGCAgCGCuccauUGCaGCCGGCUc -3' miRNA: 3'- cGGGGGCAUGUgGCG-----ACG-CGGCCGAu -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 111872 | 0.78 | 0.104891 |
Target: 5'- cCCCCCGUGCAgCGCuccauUGCaGCCGGCUc -3' miRNA: 3'- cGGGGGCAUGUgGCG-----ACG-CGGCCGAu -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 107439 | 0.77 | 0.119077 |
Target: 5'- cGCCCuuGccccCGCCGCgUGCGCCGGCg- -3' miRNA: 3'- -CGGGggCau--GUGGCG-ACGCGGCCGau -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 120994 | 0.77 | 0.122121 |
Target: 5'- -gCCCCGgcCGCCGCUGCgcaGCCGGCc- -3' miRNA: 3'- cgGGGGCauGUGGCGACG---CGGCCGau -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 4894 | 0.76 | 0.126504 |
Target: 5'- gGCCCCCGcgccgcugcgaacgACACCGaCcGCGCCGGCg- -3' miRNA: 3'- -CGGGGGCa-------------UGUGGC-GaCGCGGCCGau -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 107707 | 0.76 | 0.126504 |
Target: 5'- gGCCCCCGcgccgcugcgaacgACACCGaCcGCGCCGGCg- -3' miRNA: 3'- -CGGGGGCa-------------UGUGGC-GaCGCGGCCGau -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 112974 | 0.76 | 0.128105 |
Target: 5'- cGCCCgagcaggCCG-GC-CCGCUGCGCCGGCUu -3' miRNA: 3'- -CGGG-------GGCaUGuGGCGACGCGGCCGAu -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 10161 | 0.76 | 0.128105 |
Target: 5'- cGCCCgagcaggCCG-GC-CCGCUGCGCCGGCUu -3' miRNA: 3'- -CGGG-------GGCaUGuGGCGACGCGGCCGAu -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 48024 | 0.76 | 0.145529 |
Target: 5'- aGCCCCCGa--GCCGC-GCGCUGGCc- -3' miRNA: 3'- -CGGGGGCaugUGGCGaCGCGGCCGau -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 88537 | 0.76 | 0.145529 |
Target: 5'- aCgCUCGUGCGCCGCgaggccGCGCCGGCg- -3' miRNA: 3'- cGgGGGCAUGUGGCGa-----CGCGGCCGau -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 113399 | 0.75 | 0.14919 |
Target: 5'- gGCCCCCccGCGCgCGCgggccgGCGCCGGCc- -3' miRNA: 3'- -CGGGGGcaUGUG-GCGa-----CGCGGCCGau -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 10586 | 0.75 | 0.14919 |
Target: 5'- gGCCCCCccGCGCgCGCgggccgGCGCCGGCc- -3' miRNA: 3'- -CGGGGGcaUGUG-GCGa-----CGCGGCCGau -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 52269 | 0.75 | 0.152934 |
Target: 5'- uGCUCgCGUGC-CCGC-GCGCCGGCUu -3' miRNA: 3'- -CGGGgGCAUGuGGCGaCGCGGCCGAu -5' |
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6358 | 3' | -63 | NC_001847.1 | + | 30101 | 0.75 | 0.156764 |
Target: 5'- cGCCCgCGcccaGCGCCGCgGCGCUGGCg- -3' miRNA: 3'- -CGGGgGCa---UGUGGCGaCGCGGCCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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