miRNA display CGI


Results 1 - 20 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 376 0.73 0.214945
Target:  5'- -gCCCCGcGCGCCGC-GCGCCGGa-- -3'
miRNA:   3'- cgGGGGCaUGUGGCGaCGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 616 0.68 0.427512
Target:  5'- cGCgCCCCGUguaccaccacauGCGCCGCgGCcGCaCGGCc- -3'
miRNA:   3'- -CG-GGGGCA------------UGUGGCGaCG-CG-GCCGau -5'
6358 3' -63 NC_001847.1 + 750 0.71 0.288732
Target:  5'- gGCCCCCcUAgggcgaggccggccCGCCGCcggcgGCGCCGGCc- -3'
miRNA:   3'- -CGGGGGcAU--------------GUGGCGa----CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 908 0.71 0.271529
Target:  5'- gGCCgCCGgcCGCCGCc-CGCCGGCg- -3'
miRNA:   3'- -CGGgGGCauGUGGCGacGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 947 0.72 0.26476
Target:  5'- gGCCCgCGcGCGCCGCuccacgcUGCGCCgGGCg- -3'
miRNA:   3'- -CGGGgGCaUGUGGCG-------ACGCGG-CCGau -5'
6358 3' -63 NC_001847.1 + 949 0.68 0.418962
Target:  5'- cGCgCCCGggga-CGaCUGCGCCGGCa- -3'
miRNA:   3'- -CGgGGGCaugugGC-GACGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 1273 0.68 0.453764
Target:  5'- aGCCCCCagcgGUugGCgGC-GCGgUGGCUGg -3'
miRNA:   3'- -CGGGGG----CAugUGgCGaCGCgGCCGAU- -5'
6358 3' -63 NC_001847.1 + 1723 0.66 0.576098
Target:  5'- aGCCgCCGccGCGCCGCgGCcaGCCGcGCg- -3'
miRNA:   3'- -CGGgGGCa-UGUGGCGaCG--CGGC-CGau -5'
6358 3' -63 NC_001847.1 + 1921 0.66 0.527686
Target:  5'- aGCCCgCCGcgGCGCgGCggccacucggGcCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCa-UGUGgCGa---------C-GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 2088 0.67 0.490077
Target:  5'- cGCCCCgCGggGC-CCGC-GCGgCGGCg- -3'
miRNA:   3'- -CGGGG-GCa-UGuGGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 2222 0.66 0.576098
Target:  5'- gGCCgCCa-GCGCCGCgGCGCUgGGCg- -3'
miRNA:   3'- -CGGgGGcaUGUGGCGaCGCGG-CCGau -5'
6358 3' -63 NC_001847.1 + 2346 0.67 0.471743
Target:  5'- gGCUCCCGccGCGCCggcccgGCcGCGUCGGCg- -3'
miRNA:   3'- -CGGGGGCa-UGUGG------CGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 2418 0.68 0.453764
Target:  5'- uCCCCCGagggGCcccCCGCgGCgGCCGGCa- -3'
miRNA:   3'- cGGGGGCa---UGu--GGCGaCG-CGGCCGau -5'
6358 3' -63 NC_001847.1 + 2745 0.83 0.045722
Target:  5'- gGCCCCCGgcccgGCGCgGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGgCGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 2779 0.68 0.428372
Target:  5'- cGCCCCCGccggcggccuccaggGCcgcgagcgcgGCCGCcagccGCGCCGGCa- -3'
miRNA:   3'- -CGGGGGCa--------------UG----------UGGCGa----CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 2966 0.67 0.480868
Target:  5'- cGCCUCgGcgcgcaGCGCCGCcgGgGCCGGCg- -3'
miRNA:   3'- -CGGGGgCa-----UGUGGCGa-CgCGGCCGau -5'
6358 3' -63 NC_001847.1 + 3062 0.7 0.346923
Target:  5'- cGCUCCgGgUGCGCCGCcagcGCGuCCGGCg- -3'
miRNA:   3'- -CGGGGgC-AUGUGGCGa---CGC-GGCCGau -5'
6358 3' -63 NC_001847.1 + 3117 0.66 0.546893
Target:  5'- gGCCCgCCGcggccgagaGCACCgggagcccgGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCa--------UGUGG---------CGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 3195 0.72 0.236262
Target:  5'- cGCCgCCGU-CGCCGCcauCGCCGGCg- -3'
miRNA:   3'- -CGGgGGCAuGUGGCGac-GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 3224 0.71 0.271529
Target:  5'- aGCCgCUCGcGCGCCGCccGCGCCGuGCUc -3'
miRNA:   3'- -CGG-GGGCaUGUGGCGa-CGCGGC-CGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.