miRNA display CGI


Results 1 - 20 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 105558 0.83 0.045722
Target:  5'- gGCCCCCGgcccgGCGCgGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGgCGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 133066 0.73 0.20689
Target:  5'- gGCCCCgCGgggcgcucgccgcCACCGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGGG-GCau-----------GUGGCGACGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 131246 0.73 0.209879
Target:  5'- cGCCCgCGcuggcUACGCCGCgGCGCCGcGCg- -3'
miRNA:   3'- -CGGGgGC-----AUGUGGCGaCGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 76672 0.66 0.576098
Target:  5'- cGCCuuuuucgaCCCGUucACGCgCGCgGCGCugCGGCUGg -3'
miRNA:   3'- -CGG--------GGGCA--UGUG-GCGaCGCG--GCCGAU- -5'
6358 3' -63 NC_001847.1 + 112974 0.76 0.128105
Target:  5'- cGCCCgagcaggCCG-GC-CCGCUGCGCCGGCUu -3'
miRNA:   3'- -CGGG-------GGCaUGuGGCGACGCGGCCGAu -5'
6358 3' -63 NC_001847.1 + 48024 0.76 0.145529
Target:  5'- aGCCCCCGa--GCCGC-GCGCUGGCc- -3'
miRNA:   3'- -CGGGGGCaugUGGCGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 52269 0.75 0.152934
Target:  5'- uGCUCgCGUGC-CCGC-GCGCCGGCUu -3'
miRNA:   3'- -CGGGgGCAUGuGGCGaCGCGGCCGAu -5'
6358 3' -63 NC_001847.1 + 132914 0.75 0.156764
Target:  5'- cGCCCgCGcccaGCGCCGCgGCGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUGGCGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 64450 0.74 0.186076
Target:  5'- cGCCCCCGc-CGCCGCccGCGgCGGCg- -3'
miRNA:   3'- -CGGGGGCauGUGGCGa-CGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 16264 0.73 0.204917
Target:  5'- cGgCCCCGUGCACCGa-GCGcCCGGgUAa -3'
miRNA:   3'- -CgGGGGCAUGUGGCgaCGC-GGCCgAU- -5'
6358 3' -63 NC_001847.1 + 83576 0.74 0.195298
Target:  5'- -gCCCCG-GCGCCGCggaaGCGCUGGCg- -3'
miRNA:   3'- cgGGGGCaUGUGGCGa---CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 126667 0.74 0.177239
Target:  5'- cGCCCCCGgccgaGCGCCGCccccgGC-CCGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGGCGa----CGcGGCCGau -5'
6358 3' -63 NC_001847.1 + 111872 0.78 0.104891
Target:  5'- cCCCCCGUGCAgCGCuccauUGCaGCCGGCUc -3'
miRNA:   3'- cGGGGGCAUGUgGCG-----ACG-CGGCCGAu -5'
6358 3' -63 NC_001847.1 + 102810 0.74 0.195298
Target:  5'- gGCCCCCuccGCGCCGCgccGCGCgGGCc- -3'
miRNA:   3'- -CGGGGGca-UGUGGCGa--CGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 120994 0.77 0.122121
Target:  5'- -gCCCCGgcCGCCGCUGCgcaGCCGGCc- -3'
miRNA:   3'- cgGGGGCauGUGGCGACG---CGGCCGau -5'
6358 3' -63 NC_001847.1 + 46891 0.75 0.164684
Target:  5'- cGUCCCCGcccgGCGcCCGCgccGCGCCGGCc- -3'
miRNA:   3'- -CGGGGGCa---UGU-GGCGa--CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 76581 0.73 0.200057
Target:  5'- gGCCCCCGaucuucgcCGCCGCUgGCGgCGGCg- -3'
miRNA:   3'- -CGGGGGCau------GUGGCGA-CGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 106526 0.73 0.209879
Target:  5'- gGCCCCgCGgcCGCCGCguaGCGCgCGGCc- -3'
miRNA:   3'- -CGGGG-GCauGUGGCGa--CGCG-GCCGau -5'
6358 3' -63 NC_001847.1 + 107707 0.76 0.126504
Target:  5'- gGCCCCCGcgccgcugcgaacgACACCGaCcGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCa-------------UGUGGC-GaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 113399 0.75 0.14919
Target:  5'- gGCCCCCccGCGCgCGCgggccgGCGCCGGCc- -3'
miRNA:   3'- -CGGGGGcaUGUG-GCGa-----CGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.