miRNA display CGI


Results 21 - 40 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 7203 0.66 0.566318
Target:  5'- cGUCCUCGaGCGCgGCUGgGCCGuccauggcGCUGc -3'
miRNA:   3'- -CGGGGGCaUGUGgCGACgCGGC--------CGAU- -5'
6358 3' -63 NC_001847.1 + 10418 0.66 0.566318
Target:  5'- uCCCCCGcGCgguucgcgcuGCCGCccccGCGCCcGGCUc -3'
miRNA:   3'- cGGGGGCaUG----------UGGCGa---CGCGG-CCGAu -5'
6358 3' -63 NC_001847.1 + 100708 0.66 0.566318
Target:  5'- gGCCacuuccauuUCgGUGCGCCGCcucuucUGCGCCGaGCUc -3'
miRNA:   3'- -CGG---------GGgCAUGUGGCG------ACGCGGC-CGAu -5'
6358 3' -63 NC_001847.1 + 77603 0.66 0.566318
Target:  5'- gGCaCCCGUuucuggcgGCGCCGCUGgGCgaggaCGGCg- -3'
miRNA:   3'- -CGgGGGCA--------UGUGGCGACgCG-----GCCGau -5'
6358 3' -63 NC_001847.1 + 84595 0.66 0.566318
Target:  5'- cGCCgCgGUccagcaGCGCCGCUGCGUCGcCUu -3'
miRNA:   3'- -CGGgGgCA------UGUGGCGACGCGGCcGAu -5'
6358 3' -63 NC_001847.1 + 131898 0.66 0.566318
Target:  5'- cGCCCCUGc-CGCCgGCgagcacgGCGCgGGCg- -3'
miRNA:   3'- -CGGGGGCauGUGG-CGa------CGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 131347 0.66 0.566318
Target:  5'- cGCCgCCCG---GCCGCgUGCGCuuCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCG-ACGCG--GCCGau -5'
6358 3' -63 NC_001847.1 + 49427 0.66 0.566318
Target:  5'- uGCCgCCGUGCACUG--GCGCUuguGGCUc -3'
miRNA:   3'- -CGGgGGCAUGUGGCgaCGCGG---CCGAu -5'
6358 3' -63 NC_001847.1 + 132491 0.66 0.566318
Target:  5'- aGCCgCCGggcgaagGCGCCGCaagcgGCGaCGGCg- -3'
miRNA:   3'- -CGGgGGCa------UGUGGCGa----CGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 128695 0.66 0.566318
Target:  5'- gGCCa-CGUACGCCGUcgccGCGCCGcCUAa -3'
miRNA:   3'- -CGGggGCAUGUGGCGa---CGCGGCcGAU- -5'
6358 3' -63 NC_001847.1 + 29085 0.66 0.566318
Target:  5'- cGCCCCUGc-CGCCgGCgagcacgGCGCgGGCg- -3'
miRNA:   3'- -CGGGGGCauGUGG-CGa------CGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 59203 0.66 0.566318
Target:  5'- aGCCCgagCCGUccGCGCCGUgcgcuugcacGCGUCGGCc- -3'
miRNA:   3'- -CGGG---GGCA--UGUGGCGa---------CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 28534 0.66 0.566318
Target:  5'- cGCCgCCCG---GCCGCgUGCGCuuCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCG-ACGCG--GCCGau -5'
6358 3' -63 NC_001847.1 + 132555 0.66 0.566318
Target:  5'- gGCUCgCGUGCgGCCGCgGCGgCCGcGCa- -3'
miRNA:   3'- -CGGGgGCAUG-UGGCGaCGC-GGC-CGau -5'
6358 3' -63 NC_001847.1 + 59283 0.66 0.565342
Target:  5'- aGCCCCggcggcgggaaacCGUACccagggugccagGgCGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGGG-------------GCAUG------------UgGCGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 86956 0.66 0.557553
Target:  5'- gGCCgCCGgcgcggcacagcaggACGCCGCcgGCcggGCCGGCg- -3'
miRNA:   3'- -CGGgGGCa--------------UGUGGCGa-CG---CGGCCGau -5'
6358 3' -63 NC_001847.1 + 33679 0.66 0.556581
Target:  5'- cGCCgCCCuUGCgGCCGC-GCGgCGGCa- -3'
miRNA:   3'- -CGG-GGGcAUG-UGGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 95536 0.66 0.556581
Target:  5'- uGCCCCUGgggcuggggccGCGCCGCagcaGCGCUGGg-- -3'
miRNA:   3'- -CGGGGGCa----------UGUGGCGa---CGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 14140 0.66 0.556581
Target:  5'- uGUCUCCGgccgGCugCGCaGCGgCGGCc- -3'
miRNA:   3'- -CGGGGGCa---UGugGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 10045 0.66 0.556581
Target:  5'- cGCgUUCGUcacggccgacacGCGCgCGCUGCGCCGcGCg- -3'
miRNA:   3'- -CGgGGGCA------------UGUG-GCGACGCGGC-CGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.