miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 5' -57.1 NC_001847.1 + 68934 0.66 0.822992
Target:  5'- cGCGGCGGccgCGGGCUGCgCCuccagcCAGg -3'
miRNA:   3'- uCGUCGUCcaaGUCCGACG-GGua----GUC- -5'
6358 5' -57.1 NC_001847.1 + 26032 0.66 0.822992
Target:  5'- cGGCAGCaaaAGGUgCGGGCcaggUGCUCGcUCGGc -3'
miRNA:   3'- -UCGUCG---UCCAaGUCCG----ACGGGU-AGUC- -5'
6358 5' -57.1 NC_001847.1 + 120070 0.66 0.814203
Target:  5'- uGCcGCAGGcgaucccCGGGCcGCCgGUCAGa -3'
miRNA:   3'- uCGuCGUCCaa-----GUCCGaCGGgUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 2293 0.66 0.814203
Target:  5'- cGGCGGCGGGgccgcCGGGCggcauggGCCCcagcacgCGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa------CGGGua-----GUC- -5'
6358 5' -57.1 NC_001847.1 + 97956 0.66 0.814203
Target:  5'- cAGCGGCgAGGggu-GGCUGUaCGUCAGc -3'
miRNA:   3'- -UCGUCG-UCCaaguCCGACGgGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 58677 0.66 0.814203
Target:  5'- cGGUugGGCGGGcggCAGGCUGgCCAUg-- -3'
miRNA:   3'- -UCG--UCGUCCaa-GUCCGACgGGUAguc -5'
6358 5' -57.1 NC_001847.1 + 105106 0.66 0.814203
Target:  5'- cGGCGGCGGGgccgcCGGGCggcauggGCCCcagcacgCGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa------CGGGua-----GUC- -5'
6358 5' -57.1 NC_001847.1 + 75015 0.66 0.805241
Target:  5'- gGGCGGgGGGccagCGGGCagaagGCgCCGUCGGu -3'
miRNA:   3'- -UCGUCgUCCaa--GUCCGa----CG-GGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 91882 0.66 0.805241
Target:  5'- cGCAGCAGGUgcccccCGGGCgccgcgccGCCCGc--- -3'
miRNA:   3'- uCGUCGUCCAa-----GUCCGa-------CGGGUaguc -5'
6358 5' -57.1 NC_001847.1 + 70253 0.66 0.805241
Target:  5'- gGGCGGCGGGcgcgCGGcGUUGCUC-UCGGc -3'
miRNA:   3'- -UCGUCGUCCaa--GUC-CGACGGGuAGUC- -5'
6358 5' -57.1 NC_001847.1 + 48950 0.66 0.805241
Target:  5'- cAGCAGCcgccGGU--AGGCcgcGCCCGUCAu -3'
miRNA:   3'- -UCGUCGu---CCAagUCCGa--CGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 81822 0.66 0.796117
Target:  5'- uGCGGCGuGGUcCAGGCgagGUCCAgcgcguacgUCAGc -3'
miRNA:   3'- uCGUCGU-CCAaGUCCGa--CGGGU---------AGUC- -5'
6358 5' -57.1 NC_001847.1 + 106791 0.66 0.796117
Target:  5'- cAGCAGCGGGcggaugaCGGccgcGCUGCCCGcCGGc -3'
miRNA:   3'- -UCGUCGUCCaa-----GUC----CGACGGGUaGUC- -5'
6358 5' -57.1 NC_001847.1 + 85882 0.66 0.786838
Target:  5'- gAGCAGCgcgagcuugucgAGGUcCAGGCgaGCCgCGUCGc -3'
miRNA:   3'- -UCGUCG------------UCCAaGUCCGa-CGG-GUAGUc -5'
6358 5' -57.1 NC_001847.1 + 14200 0.66 0.786838
Target:  5'- uGGCGGCGGGgcuggcggUCAGGCcgGCCgGgggCGu -3'
miRNA:   3'- -UCGUCGUCCa-------AGUCCGa-CGGgUa--GUc -5'
6358 5' -57.1 NC_001847.1 + 16843 0.66 0.777415
Target:  5'- cAGUGGC-GGUgCAGGUguagucgacggGCCCGUCGGu -3'
miRNA:   3'- -UCGUCGuCCAaGUCCGa----------CGGGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 79647 0.66 0.777415
Target:  5'- cAGCAGCAGGgccCAcGUcGCCCAUagCAGg -3'
miRNA:   3'- -UCGUCGUCCaa-GUcCGaCGGGUA--GUC- -5'
6358 5' -57.1 NC_001847.1 + 129204 0.66 0.775514
Target:  5'- aAGCAGCGGG--CGGGCccgucguccgccGCCCAUCc- -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa-----------CGGGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 26391 0.66 0.775514
Target:  5'- aAGCAGCGGG--CGGGCccgucguccgccGCCCAUCc- -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa-----------CGGGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 22482 0.67 0.767856
Target:  5'- cGCAGguGGggCaAGGCUGgCCGUg-- -3'
miRNA:   3'- uCGUCguCCaaG-UCCGACgGGUAguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.