miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 3' -56.4 NC_001847.1 + 18003 0.66 0.837625
Target:  5'- aGCgUCgggGCUGUUgGGCGuGGGGg -3'
miRNA:   3'- gCGgAGauaCGACAGgUCGCuCUCCa -5'
6359 3' -56.4 NC_001847.1 + 102096 0.68 0.775163
Target:  5'- gCGCCUCggccGCgagcgcGUCCAGCucggcgGAGAGGg -3'
miRNA:   3'- -GCGGAGaua-CGa-----CAGGUCG------CUCUCCa -5'
6359 3' -56.4 NC_001847.1 + 81056 0.69 0.685897
Target:  5'- gCGCCUCUAgGUUG-CCGGCGA-AGGc -3'
miRNA:   3'- -GCGGAGAUaCGACaGGUCGCUcUCCa -5'
6359 3' -56.4 NC_001847.1 + 55071 0.7 0.644623
Target:  5'- cCGCgUUUAUGCUGgcggCC-GCGGGGGGc -3'
miRNA:   3'- -GCGgAGAUACGACa---GGuCGCUCUCCa -5'
6359 3' -56.4 NC_001847.1 + 89303 0.71 0.582563
Target:  5'- gGCCUCggccGUGCcGcCCAGCGAGuGGc -3'
miRNA:   3'- gCGGAGa---UACGaCaGGUCGCUCuCCa -5'
6359 3' -56.4 NC_001847.1 + 98449 0.72 0.511887
Target:  5'- cCGCCUCcaccacgccGCUcucGUCCAGCGGGGGGc -3'
miRNA:   3'- -GCGGAGaua------CGA---CAGGUCGCUCUCCa -5'
6359 3' -56.4 NC_001847.1 + 121127 1.08 0.002483
Target:  5'- gCGCCUCUAUGCUGUCCAGCGAGAGGUa -3'
miRNA:   3'- -GCGGAGAUACGACAGGUCGCUCUCCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.