Results 21 - 40 of 513 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 27882 | 0.66 | 0.489427 |
Target: 5'- gGACgcggaCGUCGCggagUGCgccgaGGCCgaGGGGGCg -3' miRNA: 3'- aCUGg----GCGGCGa---ACGg----CCGG--UCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 9828 | 0.66 | 0.489427 |
Target: 5'- cGGCCCGCCGCcgccaUGagccaCGGCCAGccuuGCc -3' miRNA: 3'- aCUGGGCGGCGa----ACg----GCCGGUCcc--CG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 66676 | 0.66 | 0.498587 |
Target: 5'- -cGCCCGCgCgGCgggGCCccGGCCGcGGGCg -3' miRNA: 3'- acUGGGCG-G-CGaa-CGG--CCGGUcCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 132127 | 0.66 | 0.502272 |
Target: 5'- gUGACCgccccuauugggcggCGCUGC-UGCCGcGCaggguGGGGCc -3' miRNA: 3'- -ACUGG---------------GCGGCGaACGGC-CGgu---CCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 74655 | 0.66 | 0.505044 |
Target: 5'- cGGCCCGCgCGCgcacaaagcggcggcGCCauGGCggacgcgcccgaCGGGGGCa -3' miRNA: 3'- aCUGGGCG-GCGaa-------------CGG--CCG------------GUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 32869 | 0.66 | 0.506895 |
Target: 5'- cGACCUcacggcgGCCGacgGCgaGGCCucGGGGGCc -3' miRNA: 3'- aCUGGG-------CGGCgaaCGg-CCGG--UCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 54815 | 0.66 | 0.507822 |
Target: 5'- cUGGCgCCGCUGUUUGCCG-CCAc-GGCc -3' miRNA: 3'- -ACUG-GGCGGCGAACGGCcGGUccCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 2812 | 0.66 | 0.507822 |
Target: 5'- cGGCCgccaGCCGC--GCCGgcaccuccGCCGGcGGGCu -3' miRNA: 3'- aCUGGg---CGGCGaaCGGC--------CGGUC-CCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 58539 | 0.66 | 0.507822 |
Target: 5'- aGG-CCGCCGCggucuucGCCGccGCCAGcGGCg -3' miRNA: 3'- aCUgGGCGGCGaa-----CGGC--CGGUCcCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 3932 | 0.66 | 0.507822 |
Target: 5'- -cGCCCG-CGCUggcGCCGcGgCGGGGGg -3' miRNA: 3'- acUGGGCgGCGAa--CGGC-CgGUCCCCg -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 204 | 0.66 | 0.498587 |
Target: 5'- -cGCCC-CCGCcc-CCGGCgccCGGGGGCc -3' miRNA: 3'- acUGGGcGGCGaacGGCCG---GUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 93735 | 0.66 | 0.498587 |
Target: 5'- cGGCCgGCUGCUagaccGCgCGGUCcGGGaGCg -3' miRNA: 3'- aCUGGgCGGCGAa----CG-GCCGGuCCC-CG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 32677 | 0.66 | 0.489427 |
Target: 5'- cUGcAUCCGCCGgUgGCUGG--AGGGGCg -3' miRNA: 3'- -AC-UGGGCGGCgAaCGGCCggUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 114405 | 0.66 | 0.489427 |
Target: 5'- aGGCCCGCCuCaccGCCGGUCuguccgacGGcGGCa -3' miRNA: 3'- aCUGGGCGGcGaa-CGGCCGGu-------CC-CCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 28399 | 0.66 | 0.489427 |
Target: 5'- --cCCCGCCGCggcGCCaGCgCGGGcGCg -3' miRNA: 3'- acuGGGCGGCGaa-CGGcCG-GUCCcCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 29088 | 0.66 | 0.489427 |
Target: 5'- --cCCUGCCGCcggcgaGCaCGGCgCGGGcGGCg -3' miRNA: 3'- acuGGGCGGCGaa----CG-GCCG-GUCC-CCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 108755 | 0.66 | 0.489427 |
Target: 5'- cGuuCCUGCCGCgcugggcGCCGgacgcGCCGGGcGGCc -3' miRNA: 3'- aCu-GGGCGGCGaa-----CGGC-----CGGUCC-CCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 130915 | 0.66 | 0.489427 |
Target: 5'- cGugCCGgCGCgcGCCGGCaccgcgcaGGGCu -3' miRNA: 3'- aCugGGCgGCGaaCGGCCGguc-----CCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 44103 | 0.66 | 0.489427 |
Target: 5'- -cGCCCGCCGCcUGCgCGcaagaugaGCCGGuugcuuuacguGGGCg -3' miRNA: 3'- acUGGGCGGCGaACG-GC--------CGGUC-----------CCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 8 | 0.66 | 0.495831 |
Target: 5'- -cGCCgCGCCGC--GCgGGCCcccugcgaccccggGGGGGUg -3' miRNA: 3'- acUGG-GCGGCGaaCGgCCGG--------------UCCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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