Results 21 - 40 of 513 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 131994 | 0.78 | 0.087544 |
Target: 5'- cGGCCCGCCGCgccGCCGGCgCcgccGGGCu -3' miRNA: 3'- aCUGGGCGGCGaa-CGGCCG-Guc--CCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 115713 | 0.77 | 0.099346 |
Target: 5'- cGGCCCGUgugCGCUUGCC-GCCAcGGGCg -3' miRNA: 3'- aCUGGGCG---GCGAACGGcCGGUcCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 97698 | 0.76 | 0.103951 |
Target: 5'- aGGCCCGCUGCUgcgcucgccgucGUCGG-CGGGGGCa -3' miRNA: 3'- aCUGGGCGGCGAa-----------CGGCCgGUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 83936 | 0.76 | 0.104475 |
Target: 5'- gGGCCCGCuCGaagUGCgcgcggGGCCGGGGGCg -3' miRNA: 3'- aCUGGGCG-GCga-ACGg-----CCGGUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 106051 | 0.76 | 0.104475 |
Target: 5'- -cGCCCGCgccgUGCUcGCCGGCggCAGGGGCg -3' miRNA: 3'- acUGGGCG----GCGAaCGGCCG--GUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 3238 | 0.76 | 0.104475 |
Target: 5'- -cGCCCGCgccgUGCUcGCCGGCggCAGGGGCg -3' miRNA: 3'- acUGGGCG----GCGAaCGGCCG--GUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 92156 | 0.76 | 0.104738 |
Target: 5'- gGGCCCGCCGacagcgaacccggGCCGGCCGGcGGCc -3' miRNA: 3'- aCUGGGCGGCgaa----------CGGCCGGUCcCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 26509 | 0.76 | 0.107132 |
Target: 5'- gGGCCUGCCGg--GCgcggGGCCGGGGGCg -3' miRNA: 3'- aCUGGGCGGCgaaCGg---CCGGUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 129322 | 0.76 | 0.107132 |
Target: 5'- gGGCCUGCCGg--GCgcggGGCCGGGGGCg -3' miRNA: 3'- aCUGGGCGGCgaaCGg---CCGGUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 134378 | 0.76 | 0.109853 |
Target: 5'- cGGCgCCGCCgGCggcggGCCGGCCucgcccuagGGGGGCc -3' miRNA: 3'- aCUG-GGCGG-CGaa---CGGCCGG---------UCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 31565 | 0.76 | 0.109853 |
Target: 5'- cGGCgCCGCCgGCggcggGCCGGCCucgcccuagGGGGGCc -3' miRNA: 3'- aCUG-GGCGG-CGaa---CGGCCGG---------UCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 45614 | 0.76 | 0.112638 |
Target: 5'- cUGACCCGUCGC-UGCCGcCCGGcGGCa -3' miRNA: 3'- -ACUGGGCGGCGaACGGCcGGUCcCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 99768 | 0.76 | 0.115489 |
Target: 5'- gUGAgCCGCCGCg-GCUuugGGCgGGGGGCa -3' miRNA: 3'- -ACUgGGCGGCGaaCGG---CCGgUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 37580 | 0.76 | 0.115489 |
Target: 5'- -cGCUgGCCGCUgcggcUGCggCGGCCGGGGGCc -3' miRNA: 3'- acUGGgCGGCGA-----ACG--GCCGGUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 49503 | 0.76 | 0.118407 |
Target: 5'- cUGAUCggCGCCGCUUcGCCGGgCGcGGGGCu -3' miRNA: 3'- -ACUGG--GCGGCGAA-CGGCCgGU-CCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 6676 | 0.76 | 0.121394 |
Target: 5'- aGGCUagGCCGCggcgGCCGGCCGGGcGCg -3' miRNA: 3'- aCUGGg-CGGCGaa--CGGCCGGUCCcCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 50104 | 0.75 | 0.124451 |
Target: 5'- cGGCCaGCUGCUggggGCCGGgCuGGGGCu -3' miRNA: 3'- aCUGGgCGGCGAa---CGGCCgGuCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 32207 | 0.75 | 0.126633 |
Target: 5'- aGGCCCGCgggcggggccggggCGCggggcGCCGGacCCAGGGGCg -3' miRNA: 3'- aCUGGGCG--------------GCGaa---CGGCC--GGUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 135020 | 0.75 | 0.126633 |
Target: 5'- aGGCCCGCgggcggggccggggCGCggggcGCCGGacCCAGGGGCg -3' miRNA: 3'- aCUGGGCG--------------GCGaa---CGGCC--GGUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 125437 | 0.75 | 0.127579 |
Target: 5'- gGACCCG-CGCgugGCUGGCCGGaggacGGGCg -3' miRNA: 3'- aCUGGGCgGCGaa-CGGCCGGUC-----CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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