Results 41 - 60 of 513 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 28399 | 0.66 | 0.489427 |
Target: 5'- --cCCCGCCGCggcGCCaGCgCGGGcGCg -3' miRNA: 3'- acuGGGCGGCGaa-CGGcCG-GUCCcCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 29088 | 0.66 | 0.489427 |
Target: 5'- --cCCUGCCGCcggcgaGCaCGGCgCGGGcGGCg -3' miRNA: 3'- acuGGGCGGCGaa----CG-GCCG-GUCC-CCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 108755 | 0.66 | 0.489427 |
Target: 5'- cGuuCCUGCCGCgcugggcGCCGgacgcGCCGGGcGGCc -3' miRNA: 3'- aCu-GGGCGGCGaa-----CGGC-----CGGUCC-CCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 130915 | 0.66 | 0.489427 |
Target: 5'- cGugCCGgCGCgcGCCGGCaccgcgcaGGGCu -3' miRNA: 3'- aCugGGCgGCGaaCGGCCGguc-----CCCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 44103 | 0.66 | 0.489427 |
Target: 5'- -cGCCCGCCGCcUGCgCGcaagaugaGCCGGuugcuuuacguGGGCg -3' miRNA: 3'- acUGGGCGGCGaACG-GC--------CGGUC-----------CCCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 27882 | 0.66 | 0.489427 |
Target: 5'- gGACgcggaCGUCGCggagUGCgccgaGGCCgaGGGGGCg -3' miRNA: 3'- aCUGg----GCGGCGa---ACGg----CCGG--UCCCCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 39443 | 0.66 | 0.489427 |
Target: 5'- cGGCCCgcGCCGCcccCCGcGCCAGaGcGGCc -3' miRNA: 3'- aCUGGG--CGGCGaacGGC-CGGUC-C-CCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 125554 | 0.66 | 0.488516 |
Target: 5'- --cCCCGCgGCUgcgGCucgaucgCGGCCGcGGGCg -3' miRNA: 3'- acuGGGCGgCGAa--CG-------GCCGGUcCCCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 88925 | 0.66 | 0.480347 |
Target: 5'- aGAuuUCC-CCGCg-GCCGGCCcGGcGGCg -3' miRNA: 3'- aCU--GGGcGGCGaaCGGCCGGuCC-CCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 30348 | 0.66 | 0.480347 |
Target: 5'- cGACCCGCUGCccggGgaGGCgCuGGcGGCg -3' miRNA: 3'- aCUGGGCGGCGaa--CggCCG-GuCC-CCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 51967 | 0.66 | 0.480347 |
Target: 5'- --cCCCGCCGUccGCCaGCCcgucGGGCg -3' miRNA: 3'- acuGGGCGGCGaaCGGcCGGuc--CCCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 64856 | 0.66 | 0.480347 |
Target: 5'- cGGCgCGCCGCga-CCcGCCAGGcGCg -3' miRNA: 3'- aCUGgGCGGCGaacGGcCGGUCCcCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 107300 | 0.66 | 0.480347 |
Target: 5'- gGGCCCGCacggggucucCGCUcaUGUCaGCCGcgcgugcgccGGGGCg -3' miRNA: 3'- aCUGGGCG----------GCGA--ACGGcCGGU----------CCCCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 76641 | 0.66 | 0.480347 |
Target: 5'- -uGCCCGUCGCccUGCCcgagGGCgGGgaGGGCg -3' miRNA: 3'- acUGGGCGGCGa-ACGG----CCGgUC--CCCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 105034 | 0.66 | 0.480347 |
Target: 5'- aGGCCgccagCGCCGCggcGCUGGgCGcGGGCg -3' miRNA: 3'- aCUGG-----GCGGCGaa-CGGCCgGUcCCCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 50284 | 0.66 | 0.480347 |
Target: 5'- gUGGgCCGCCua--GCCgGGCUAGuGGGCg -3' miRNA: 3'- -ACUgGGCGGcgaaCGG-CCGGUC-CCCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 97027 | 0.66 | 0.480347 |
Target: 5'- -uGCCCGgCGCacccGCCGGgCAGcGGCg -3' miRNA: 3'- acUGGGCgGCGaa--CGGCCgGUCcCCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 128451 | 0.66 | 0.480347 |
Target: 5'- cGGCCCuGCgCGCgcgcccgGCCGGCCGccGcGGCc -3' miRNA: 3'- aCUGGG-CG-GCGaa-----CGGCCGGU--CcCCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 31089 | 0.66 | 0.480347 |
Target: 5'- cGACgCGgCGCUgggGCCGGgCAGcGcGGUg -3' miRNA: 3'- aCUGgGCgGCGAa--CGGCCgGUC-C-CCG- -5' |
|||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 78325 | 0.66 | 0.480347 |
Target: 5'- -cGCgCGCCGCggGcCCGGCUuGGGcGCc -3' miRNA: 3'- acUGgGCGGCGaaC-GGCCGGuCCC-CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home