miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 90745 0.66 0.880395
Target:  5'- cGGcGCGuGGCCGGGccCCGGGagCGGGa -3'
miRNA:   3'- cCC-CGUuUCGGCUCuaGGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 87915 0.66 0.865857
Target:  5'- aGGGGCGGGGCgUGGGG-CUGGGcgCGGc -3'
miRNA:   3'- -CCCCGUUUCG-GCUCUaGGUCCa-GCCu -5'
6360 3' -56.7 NC_001847.1 + 110425 0.66 0.880395
Target:  5'- cGGGGUggGGUgGGGGggUGGGUgGGGg -3'
miRNA:   3'- -CCCCGuuUCGgCUCUagGUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 23378 0.66 0.880395
Target:  5'- cGGuuuGCGAcGCUGAgcgaccgcaaguGAUCUAGGUCGGGg -3'
miRNA:   3'- -CCc--CGUUuCGGCU------------CUAGGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 85774 0.66 0.865857
Target:  5'- gGGGGCAGcGGCCGAuGcggugcgcGUCgAGGgugCGGGc -3'
miRNA:   3'- -CCCCGUU-UCGGCU-C--------UAGgUCCa--GCCU- -5'
6360 3' -56.7 NC_001847.1 + 106769 0.66 0.873233
Target:  5'- gGGGGCGccgucuccGGCgCGAGGgcgCCGGGggccCGGGc -3'
miRNA:   3'- -CCCCGUu-------UCG-GCUCUa--GGUCCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 75663 0.66 0.880395
Target:  5'- cGGGCGuuGCuCGuGAaggCCGGGUCGa- -3'
miRNA:   3'- cCCCGUuuCG-GCuCUa--GGUCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 54497 0.66 0.873233
Target:  5'- -cGGCGgcGCCGGGG-CCGGGgUGGGg -3'
miRNA:   3'- ccCCGUuuCGGCUCUaGGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 118012 0.66 0.873233
Target:  5'- aGGaCGAAGCCGGGAgcgCCAG--CGGAa -3'
miRNA:   3'- cCCcGUUUCGGCUCUa--GGUCcaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 114389 0.66 0.85827
Target:  5'- cGGGCAGGGaUUGcGGAUCCAcGUCGGc -3'
miRNA:   3'- cCCCGUUUC-GGC-UCUAGGUcCAGCCu -5'
6360 3' -56.7 NC_001847.1 + 46919 0.66 0.880395
Target:  5'- gGGGGCGcgucGGGcCCGGGcUCCGGGcCGc- -3'
miRNA:   3'- -CCCCGU----UUC-GGCUCuAGGUCCaGCcu -5'
6360 3' -56.7 NC_001847.1 + 7612 0.66 0.880395
Target:  5'- cGGGGUggGGUgGGGGggUGGGUgGGGg -3'
miRNA:   3'- -CCCCGuuUCGgCUCUagGUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 117043 0.66 0.865857
Target:  5'- gGGGGCuc-GCCGAGG---AGG-CGGAa -3'
miRNA:   3'- -CCCCGuuuCGGCUCUaggUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 21892 0.66 0.861329
Target:  5'- uGGGCGAcgagacgaaggagacGGCCGAGG-CCGcGGgcgaggCGGAg -3'
miRNA:   3'- cCCCGUU---------------UCGGCUCUaGGU-CCa-----GCCU- -5'
6360 3' -56.7 NC_001847.1 + 68984 0.66 0.85827
Target:  5'- cGGGCAcGGCCGAGAgcacgUCCAGcaCGu- -3'
miRNA:   3'- cCCCGUuUCGGCUCU-----AGGUCcaGCcu -5'
6360 3' -56.7 NC_001847.1 + 96271 0.66 0.8575
Target:  5'- -uGGCGGGGCCG-GAaCCGGGgccguacUCGGGg -3'
miRNA:   3'- ccCCGUUUCGGCuCUaGGUCC-------AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 50045 0.66 0.85827
Target:  5'- cGGGGCGcgguggcGGCCGcGGGUCCGcgcgcGGcgCGGAc -3'
miRNA:   3'- -CCCCGUu------UCGGC-UCUAGGU-----CCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 125384 0.67 0.817418
Target:  5'- gGGGGC---GCgCGAGGUCgAGGU-GGAc -3'
miRNA:   3'- -CCCCGuuuCG-GCUCUAGgUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 58180 0.67 0.825954
Target:  5'- cGGGGUcgucAAAGCCGccuucggccagcAGGcgcUCCGGG-CGGAu -3'
miRNA:   3'- -CCCCG----UUUCGGC------------UCU---AGGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 59697 0.67 0.834315
Target:  5'- aGGGCAAcagcAGCCaGGAcUCCGcGGUCGcGAu -3'
miRNA:   3'- cCCCGUU----UCGGcUCU-AGGU-CCAGC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.