miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 90 0.68 0.753441
Target:  5'- uGGGcGCGGAGCgCGAGGguaGGGUUGGc -3'
miRNA:   3'- -CCC-CGUUUCG-GCUCUaggUCCAGCCu -5'
6360 3' -56.7 NC_001847.1 + 2146 0.74 0.455938
Target:  5'- -aGGCGAGcGCCGGGcgCCAGGgcUCGGGg -3'
miRNA:   3'- ccCCGUUU-CGGCUCuaGGUCC--AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 2873 0.67 0.817418
Target:  5'- cGGGCGucgucgucGGGCCGGGugcgucgccGUUCGGGcCGGAc -3'
miRNA:   3'- cCCCGU--------UUCGGCUC---------UAGGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 3426 0.67 0.825954
Target:  5'- gGGGGCGccaggcgcAGCCcagGGGGUCgAGG-CGGAa -3'
miRNA:   3'- -CCCCGUu-------UCGG---CUCUAGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 3970 0.68 0.762972
Target:  5'- cGGcGGCGAGggcGCCGGGggCCGGGcgcgCGGc -3'
miRNA:   3'- -CC-CCGUUU---CGGCUCuaGGUCCa---GCCu -5'
6360 3' -56.7 NC_001847.1 + 7612 0.66 0.880395
Target:  5'- cGGGGUggGGUgGGGGggUGGGUgGGGg -3'
miRNA:   3'- -CCCCGuuUCGgCUCUagGUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 8397 0.68 0.762972
Target:  5'- uGGGGCu--GCCGGGAUagCGGGagGGc -3'
miRNA:   3'- -CCCCGuuuCGGCUCUAg-GUCCagCCu -5'
6360 3' -56.7 NC_001847.1 + 8438 0.73 0.51278
Target:  5'- cGGGuCGGAGgCG-GcgCCGGGUCGGAg -3'
miRNA:   3'- cCCC-GUUUCgGCuCuaGGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 8463 0.68 0.790836
Target:  5'- aGGcGGCGccGGGCCGGGGgcggcgcucggCCGGGggCGGGg -3'
miRNA:   3'- -CC-CCGU--UUCGGCUCUa----------GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 8605 0.71 0.572325
Target:  5'- aGGGGCGGcgcucGGCCGGGggCgGGGggaGGAg -3'
miRNA:   3'- -CCCCGUU-----UCGGCUCuaGgUCCag-CCU- -5'
6360 3' -56.7 NC_001847.1 + 11302 0.68 0.766753
Target:  5'- cGGGGCcucAGGGCCGGGGcacuaccuccaacgCCAGGaCGGc -3'
miRNA:   3'- -CCCCG---UUUCGGCUCUa-------------GGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 12954 0.72 0.522545
Target:  5'- uGGGGCGgcGGGCCGGGGguggCCcGGUCGc- -3'
miRNA:   3'- -CCCCGU--UUCGGCUCUa---GGuCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 15383 0.69 0.724245
Target:  5'- cGGGGCGgucggcgucgGGGCUGGGG-CCGGGuuUCGGc -3'
miRNA:   3'- -CCCCGU----------UUCGGCUCUaGGUCC--AGCCu -5'
6360 3' -56.7 NC_001847.1 + 17086 0.7 0.653778
Target:  5'- -cGGCAAucuG-CGAGGUCgGGGUCGGGg -3'
miRNA:   3'- ccCCGUUu--CgGCUCUAGgUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 17814 0.71 0.60886
Target:  5'- gGGGGCGAGGCCGccccccgccgCUAGGUCGc- -3'
miRNA:   3'- -CCCCGUUUCGGCucua------GGUCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 21407 0.7 0.684254
Target:  5'- cGGGCc-GGCCGAgGAUUCGGGcCGGc -3'
miRNA:   3'- cCCCGuuUCGGCU-CUAGGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 21892 0.66 0.861329
Target:  5'- uGGGCGAcgagacgaaggagacGGCCGAGG-CCGcGGgcgaggCGGAg -3'
miRNA:   3'- cCCCGUU---------------UCGGCUCUaGGU-CCa-----GCCU- -5'
6360 3' -56.7 NC_001847.1 + 22426 0.81 0.172735
Target:  5'- gGGGGCGGGGcCCGAGA-CCAcgcGGUCGGGc -3'
miRNA:   3'- -CCCCGUUUC-GGCUCUaGGU---CCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 23292 0.68 0.781678
Target:  5'- gGGGGCGGAGCaCaGGAgCuCGGGUgGGGu -3'
miRNA:   3'- -CCCCGUUUCG-GcUCUaG-GUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 23378 0.66 0.880395
Target:  5'- cGGuuuGCGAcGCUGAgcgaccgcaaguGAUCUAGGUCGGGg -3'
miRNA:   3'- -CCc--CGUUuCGGCU------------CUAGGUCCAGCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.