Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 90 | 0.68 | 0.753441 |
Target: 5'- uGGGcGCGGAGCgCGAGGguaGGGUUGGc -3' miRNA: 3'- -CCC-CGUUUCG-GCUCUaggUCCAGCCu -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 2146 | 0.74 | 0.455938 |
Target: 5'- -aGGCGAGcGCCGGGcgCCAGGgcUCGGGg -3' miRNA: 3'- ccCCGUUU-CGGCUCuaGGUCC--AGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 2873 | 0.67 | 0.817418 |
Target: 5'- cGGGCGucgucgucGGGCCGGGugcgucgccGUUCGGGcCGGAc -3' miRNA: 3'- cCCCGU--------UUCGGCUC---------UAGGUCCaGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 3426 | 0.67 | 0.825954 |
Target: 5'- gGGGGCGccaggcgcAGCCcagGGGGUCgAGG-CGGAa -3' miRNA: 3'- -CCCCGUu-------UCGG---CUCUAGgUCCaGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 3970 | 0.68 | 0.762972 |
Target: 5'- cGGcGGCGAGggcGCCGGGggCCGGGcgcgCGGc -3' miRNA: 3'- -CC-CCGUUU---CGGCUCuaGGUCCa---GCCu -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 7612 | 0.66 | 0.880395 |
Target: 5'- cGGGGUggGGUgGGGGggUGGGUgGGGg -3' miRNA: 3'- -CCCCGuuUCGgCUCUagGUCCAgCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 8397 | 0.68 | 0.762972 |
Target: 5'- uGGGGCu--GCCGGGAUagCGGGagGGc -3' miRNA: 3'- -CCCCGuuuCGGCUCUAg-GUCCagCCu -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 8438 | 0.73 | 0.51278 |
Target: 5'- cGGGuCGGAGgCG-GcgCCGGGUCGGAg -3' miRNA: 3'- cCCC-GUUUCgGCuCuaGGUCCAGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 8463 | 0.68 | 0.790836 |
Target: 5'- aGGcGGCGccGGGCCGGGGgcggcgcucggCCGGGggCGGGg -3' miRNA: 3'- -CC-CCGU--UUCGGCUCUa----------GGUCCa-GCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 8605 | 0.71 | 0.572325 |
Target: 5'- aGGGGCGGcgcucGGCCGGGggCgGGGggaGGAg -3' miRNA: 3'- -CCCCGUU-----UCGGCUCuaGgUCCag-CCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 11302 | 0.68 | 0.766753 |
Target: 5'- cGGGGCcucAGGGCCGGGGcacuaccuccaacgCCAGGaCGGc -3' miRNA: 3'- -CCCCG---UUUCGGCUCUa-------------GGUCCaGCCu -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 12954 | 0.72 | 0.522545 |
Target: 5'- uGGGGCGgcGGGCCGGGGguggCCcGGUCGc- -3' miRNA: 3'- -CCCCGU--UUCGGCUCUa---GGuCCAGCcu -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 15383 | 0.69 | 0.724245 |
Target: 5'- cGGGGCGgucggcgucgGGGCUGGGG-CCGGGuuUCGGc -3' miRNA: 3'- -CCCCGU----------UUCGGCUCUaGGUCC--AGCCu -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 17086 | 0.7 | 0.653778 |
Target: 5'- -cGGCAAucuG-CGAGGUCgGGGUCGGGg -3' miRNA: 3'- ccCCGUUu--CgGCUCUAGgUCCAGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 17814 | 0.71 | 0.60886 |
Target: 5'- gGGGGCGAGGCCGccccccgccgCUAGGUCGc- -3' miRNA: 3'- -CCCCGUUUCGGCucua------GGUCCAGCcu -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 21407 | 0.7 | 0.684254 |
Target: 5'- cGGGCc-GGCCGAgGAUUCGGGcCGGc -3' miRNA: 3'- cCCCGuuUCGGCU-CUAGGUCCaGCCu -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 21892 | 0.66 | 0.861329 |
Target: 5'- uGGGCGAcgagacgaaggagacGGCCGAGG-CCGcGGgcgaggCGGAg -3' miRNA: 3'- cCCCGUU---------------UCGGCUCUaGGU-CCa-----GCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 22426 | 0.81 | 0.172735 |
Target: 5'- gGGGGCGGGGcCCGAGA-CCAcgcGGUCGGGc -3' miRNA: 3'- -CCCCGUUUC-GGCUCUaGGU---CCAGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 23292 | 0.68 | 0.781678 |
Target: 5'- gGGGGCGGAGCaCaGGAgCuCGGGUgGGGu -3' miRNA: 3'- -CCCCGUUUCG-GcUCUaG-GUCCAgCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 23378 | 0.66 | 0.880395 |
Target: 5'- cGGuuuGCGAcGCUGAgcgaccgcaaguGAUCUAGGUCGGGg -3' miRNA: 3'- -CCc--CGUUuCGGCU------------CUAGGUCCAGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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