Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 100010 | 0.67 | 0.842493 |
Target: 5'- -uGGCGA-GCCGAGGcacggccgCCAGGUCGc- -3' miRNA: 3'- ccCCGUUuCGGCUCUa-------GGUCCAGCcu -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 81242 | 0.67 | 0.842493 |
Target: 5'- cGGGCGGGGCCGucg-CgAGGaCGGGg -3' miRNA: 3'- cCCCGUUUCGGCucuaGgUCCaGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 59697 | 0.67 | 0.834315 |
Target: 5'- aGGGCAAcagcAGCCaGGAcUCCGcGGUCGcGAu -3' miRNA: 3'- cCCCGUU----UCGGcUCU-AGGU-CCAGC-CU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 29802 | 0.67 | 0.834315 |
Target: 5'- cGGGaGCGccGCCG-GGUCCgAGGgaaGGAa -3' miRNA: 3'- -CCC-CGUuuCGGCuCUAGG-UCCag-CCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 108638 | 0.67 | 0.834315 |
Target: 5'- cGGGCGAcGCUGcAGAaguggCCGGGgccgCGGAc -3' miRNA: 3'- cCCCGUUuCGGC-UCUa----GGUCCa---GCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 124738 | 0.67 | 0.834315 |
Target: 5'- cGGGCGAGGCgGAGAgaggaCCGcGGcucgCGGGc -3' miRNA: 3'- cCCCGUUUCGgCUCUa----GGU-CCa---GCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 132615 | 0.67 | 0.834315 |
Target: 5'- cGGGaGCGccGCCG-GGUCCgAGGgaaGGAa -3' miRNA: 3'- -CCC-CGUuuCGGCuCUAGG-UCCag-CCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 3426 | 0.67 | 0.825954 |
Target: 5'- gGGGGCGccaggcgcAGCCcagGGGGUCgAGG-CGGAa -3' miRNA: 3'- -CCCCGUu-------UCGG---CUCUAGgUCCaGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 32038 | 0.67 | 0.825954 |
Target: 5'- cGGGGa--AGCCcccgcgaaAGGUCCGGGgcgCGGAg -3' miRNA: 3'- -CCCCguuUCGGc-------UCUAGGUCCa--GCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 58180 | 0.67 | 0.825954 |
Target: 5'- cGGGGUcgucAAAGCCGccuucggccagcAGGcgcUCCGGG-CGGAu -3' miRNA: 3'- -CCCCG----UUUCGGC------------UCU---AGGUCCaGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 125384 | 0.67 | 0.817418 |
Target: 5'- gGGGGC---GCgCGAGGUCgAGGU-GGAc -3' miRNA: 3'- -CCCCGuuuCG-GCUCUAGgUCCAgCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 2873 | 0.67 | 0.817418 |
Target: 5'- cGGGCGucgucgucGGGCCGGGugcgucgccGUUCGGGcCGGAc -3' miRNA: 3'- cCCCGU--------UUCGGCUC---------UAGGUCCaGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 32788 | 0.67 | 0.808714 |
Target: 5'- gGGGGgAGGGCCGGGGgcggaCGGcgcGUUGGAg -3' miRNA: 3'- -CCCCgUUUCGGCUCUag---GUC---CAGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 76815 | 0.67 | 0.79985 |
Target: 5'- gGGGGgAGGGCCacaGAGA-CCGGuGcCGGAg -3' miRNA: 3'- -CCCCgUUUCGG---CUCUaGGUC-CaGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 28112 | 0.68 | 0.790836 |
Target: 5'- cGGGGCcAGGaCCGAGG-CCGGcgacGUUGGGc -3' miRNA: 3'- -CCCCGuUUC-GGCUCUaGGUC----CAGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 130925 | 0.68 | 0.790836 |
Target: 5'- cGGGGCcAGGaCCGAGG-CCGGcgacGUUGGGc -3' miRNA: 3'- -CCCCGuUUC-GGCUCUaGGUC----CAGCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 45507 | 0.68 | 0.790836 |
Target: 5'- cGGGGCGGGcGCCGccg-CCGGGcggcgCGGAc -3' miRNA: 3'- -CCCCGUUU-CGGCucuaGGUCCa----GCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 95837 | 0.68 | 0.790836 |
Target: 5'- aGGGGCAAgccaGGCaCGGGcUCCAagcuaggcGGUCuGGAc -3' miRNA: 3'- -CCCCGUU----UCG-GCUCuAGGU--------CCAG-CCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 8463 | 0.68 | 0.790836 |
Target: 5'- aGGcGGCGccGGGCCGGGGgcggcgcucggCCGGGggCGGGg -3' miRNA: 3'- -CC-CCGU--UUCGGCUCUa----------GGUCCa-GCCU- -5' |
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6360 | 3' | -56.7 | NC_001847.1 | + | 111276 | 0.68 | 0.790836 |
Target: 5'- aGGcGGCGccGGGCCGGGGgcggcgcucggCCGGGggCGGGg -3' miRNA: 3'- -CC-CCGU--UUCGGCUCUa----------GGUCCa-GCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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