miRNA display CGI


Results 121 - 140 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 107987 0.67 0.636239
Target:  5'- uUGGGCuGGCCGccGCGgCUGCGCCccccggacGGCa -3'
miRNA:   3'- -ACUCGuCUGGC--CGCaGACGCGGc-------UCG- -5'
6361 3' -59.9 NC_001847.1 + 96236 0.67 0.636239
Target:  5'- gGAGUcaGGGCCGGaGUCaGgGCCG-GCg -3'
miRNA:   3'- aCUCG--UCUGGCCgCAGaCgCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 17894 0.67 0.656326
Target:  5'- gGGGCGGGCggCGGCGUgCUGUugGUaaCGGGCg -3'
miRNA:   3'- aCUCGUCUG--GCCGCA-GACG--CG--GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 133267 0.67 0.656326
Target:  5'- cUGGGCA-ACCGGC---UGCuGCUGAGCg -3'
miRNA:   3'- -ACUCGUcUGGCCGcagACG-CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 40738 0.67 0.626186
Target:  5'- cGGGCAuGGCCccgucGCGguaCUGCGCCGAaucguGCg -3'
miRNA:   3'- aCUCGU-CUGGc----CGCa--GACGCGGCU-----CG- -5'
6361 3' -59.9 NC_001847.1 + 70210 0.67 0.626186
Target:  5'- -aAGCGGccacccgccccGCCGGCGUUggugugacGCGCgGGGCg -3'
miRNA:   3'- acUCGUC-----------UGGCCGCAGa-------CGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 69688 0.67 0.626186
Target:  5'- uUGGGCgcgGGGCCGGCGcUCgguccgcgGCGCgCG-GCu -3'
miRNA:   3'- -ACUCG---UCUGGCCGC-AGa-------CGCG-GCuCG- -5'
6361 3' -59.9 NC_001847.1 + 29463 0.67 0.626186
Target:  5'- -cGGCGGcCCGcGCGUCggccuggGCGCUGGcGCg -3'
miRNA:   3'- acUCGUCuGGC-CGCAGa------CGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 106570 0.67 0.643274
Target:  5'- gGGGCAGucccagaggcccucGCgGGUGUCgcccGCGCCGccgaAGCg -3'
miRNA:   3'- aCUCGUC--------------UGgCCGCAGa---CGCGGC----UCG- -5'
6361 3' -59.9 NC_001847.1 + 21931 0.67 0.645283
Target:  5'- cGAGCGcGAgCCGGaguccgagcucguCGUCcggGCGCUGGGCc -3'
miRNA:   3'- aCUCGU-CU-GGCC-------------GCAGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 106770 0.67 0.646288
Target:  5'- gGGGCGccgucuCCGGCG-CgaggGCGCCGGGg -3'
miRNA:   3'- aCUCGUcu----GGCCGCaGa---CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 32257 0.67 0.646288
Target:  5'- cUGAcGCAGACgCGuGCGUggCUcGCGCCGuccGCg -3'
miRNA:   3'- -ACU-CGUCUG-GC-CGCA--GA-CGCGGCu--CG- -5'
6361 3' -59.9 NC_001847.1 + 135027 0.67 0.646288
Target:  5'- cGGGCGGgGCCGGgGcgCgggGCGCCGgacccaggGGCg -3'
miRNA:   3'- aCUCGUC-UGGCCgCa-Ga--CGCGGC--------UCG- -5'
6361 3' -59.9 NC_001847.1 + 33215 0.67 0.646288
Target:  5'- cGGGUGGcucgGCuUGGCG-CcGCGCCGGGCg -3'
miRNA:   3'- aCUCGUC----UG-GCCGCaGaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 60852 0.67 0.646288
Target:  5'- cUGcGCGGcGCCagGGCGUCcaGCGCgGGGCg -3'
miRNA:   3'- -ACuCGUC-UGG--CCGCAGa-CGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 122134 0.67 0.646288
Target:  5'- --cGCGacGGCCGGCG-CgcaggGCGCCGcGCg -3'
miRNA:   3'- acuCGU--CUGGCCGCaGa----CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 100704 0.67 0.646288
Target:  5'- -aGGCGGccacuuccauuUCGGUGcgccgccucuUCUGCGCCGAGCu -3'
miRNA:   3'- acUCGUCu----------GGCCGC----------AGACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 103572 0.67 0.656326
Target:  5'- aGGGCgAGGCCGGCccgccgccggCgGCGCCG-GCc -3'
miRNA:   3'- aCUCG-UCUGGCCGca--------GaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 27844 0.67 0.646288
Target:  5'- aUGAGCGGAgaccCCGuGCGggcccugugggCcGCGCuCGAGCg -3'
miRNA:   3'- -ACUCGUCU----GGC-CGCa----------GaCGCG-GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 79353 0.67 0.656326
Target:  5'- cGAGCAGcuGCCGcGCGaugcgaagCUGUGCgGcAGCg -3'
miRNA:   3'- aCUCGUC--UGGC-CGCa-------GACGCGgC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.