miRNA display CGI


Results 61 - 80 of 474 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 83586 0.71 0.434302
Target:  5'- --cGCGGaagcGCUGGCGagCUGCGCCGAcGCc -3'
miRNA:   3'- acuCGUC----UGGCCGCa-GACGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 23013 0.71 0.416899
Target:  5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 94829 0.71 0.399929
Target:  5'- gGAGCuaucgguGGCguCGGaGUCUGCGCCGAGg -3'
miRNA:   3'- aCUCGu------CUG--GCCgCAGACGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 91794 0.71 0.433422
Target:  5'- --cGCGGACgcuucguCGGCGUC-GCGCCGcGCg -3'
miRNA:   3'- acuCGUCUG-------GCCGCAGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 120904 0.71 0.399929
Target:  5'- aGAGCGGGCuCGGCGUUUGCccucaccacGCCcccGGCc -3'
miRNA:   3'- aCUCGUCUG-GCCGCAGACG---------CGGc--UCG- -5'
6361 3' -59.9 NC_001847.1 + 116768 0.71 0.399929
Target:  5'- gGGGCcuGCUGG-GUCUGCGCCGAc- -3'
miRNA:   3'- aCUCGucUGGCCgCAGACGCGGCUcg -5'
6361 3' -59.9 NC_001847.1 + 1946 0.71 0.44316
Target:  5'- cGGGCc-GCCGGCGcUCguccuCGCCGGGCg -3'
miRNA:   3'- aCUCGucUGGCCGC-AGac---GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 65904 0.71 0.44316
Target:  5'- cGuAGUAGGCCaGCGUUgccgcgGCGCCG-GCg -3'
miRNA:   3'- aC-UCGUCUGGcCGCAGa-----CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 118674 0.71 0.434302
Target:  5'- aGAGguGuCCGcGC-UCUGCGCCGcgGGCc -3'
miRNA:   3'- aCUCguCuGGC-CGcAGACGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 69496 0.71 0.412615
Target:  5'- cGGGCGcgcacgcGGCCguuGGCGgcgcagccaagccCUGCGCCGAGCa -3'
miRNA:   3'- aCUCGU-------CUGG---CCGCa------------GACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125826 0.71 0.416899
Target:  5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125766 0.71 0.416899
Target:  5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 54590 0.71 0.434302
Target:  5'- cUGGGCGGcGCUGGCGgcgcgCgcccGCGCCGAuGCc -3'
miRNA:   3'- -ACUCGUC-UGGCCGCa----Ga---CGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 33182 0.71 0.425547
Target:  5'- -cGGCuGGCCGGC-UCUGCGCCcgacuuGGCg -3'
miRNA:   3'- acUCGuCUGGCCGcAGACGCGGc-----UCG- -5'
6361 3' -59.9 NC_001847.1 + 122102 0.71 0.44316
Target:  5'- aGAGCAGcGCCucagugGGCGgcaugCUGCGCCGucuacuGCu -3'
miRNA:   3'- aCUCGUC-UGG------CCGCa----GACGCGGCu-----CG- -5'
6361 3' -59.9 NC_001847.1 + 22810 0.71 0.408359
Target:  5'- aGAuGCGGGCCGGCGgcggccgCUcccCGCCGAGg -3'
miRNA:   3'- aCU-CGUCUGGCCGCa------GAc--GCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 53729 0.71 0.416899
Target:  5'- gGGGCGGAUCGGCG-C-GCGgCGuAGCg -3'
miRNA:   3'- aCUCGUCUGGCCGCaGaCGCgGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 58310 0.71 0.425547
Target:  5'- -cGGCAGGCCGGCaug-GCGCCGcGUa -3'
miRNA:   3'- acUCGUCUGGCCGcagaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 17158 0.71 0.425547
Target:  5'- gUGGGCGG-UUGGCGUC-GCGUccuCGAGCg -3'
miRNA:   3'- -ACUCGUCuGGCCGCAGaCGCG---GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 104738 0.71 0.425547
Target:  5'- cGAGCuuGCCGGCGgccaGCGCC-AGCg -3'
miRNA:   3'- aCUCGucUGGCCGCaga-CGCGGcUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.