miRNA display CGI


Results 81 - 100 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 96343 0.71 0.434302
Target:  5'- -cGGCGGGCUGGCGUgCgacGCGCUGccGGCa -3'
miRNA:   3'- acUCGUCUGGCCGCA-Ga--CGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 120904 0.71 0.399929
Target:  5'- aGAGCGGGCuCGGCGUUUGCccucaccacGCCcccGGCc -3'
miRNA:   3'- aCUCGUCUG-GCCGCAGACG---------CGGc--UCG- -5'
6361 3' -59.9 NC_001847.1 + 54590 0.71 0.434302
Target:  5'- cUGGGCGGcGCUGGCGgcgcgCgcccGCGCCGAuGCc -3'
miRNA:   3'- -ACUCGUC-UGGCCGCa----Ga---CGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 83586 0.71 0.434302
Target:  5'- --cGCGGaagcGCUGGCGagCUGCGCCGAcGCc -3'
miRNA:   3'- acuCGUC----UGGCCGCa-GACGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 19630 0.71 0.434302
Target:  5'- gGGGC--GCCGGCGUCgGCGCgCG-GCc -3'
miRNA:   3'- aCUCGucUGGCCGCAGaCGCG-GCuCG- -5'
6361 3' -59.9 NC_001847.1 + 116801 0.71 0.44316
Target:  5'- uUGGGC-GACC-GCGaCUGCGCCcGGCa -3'
miRNA:   3'- -ACUCGuCUGGcCGCaGACGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 104351 0.7 0.470327
Target:  5'- -cGGCAGACgcggCGGCGUCcGCGCCc-GCa -3'
miRNA:   3'- acUCGUCUG----GCCGCAGaCGCGGcuCG- -5'
6361 3' -59.9 NC_001847.1 + 102474 0.7 0.470327
Target:  5'- cGAGCGGGCCcGCGcCgccgGCGCCGucCa -3'
miRNA:   3'- aCUCGUCUGGcCGCaGa---CGCGGCucG- -5'
6361 3' -59.9 NC_001847.1 + 26488 0.7 0.47957
Target:  5'- gGGGCGGGCCuggugcaaGGCGg--GCcuGCCGGGCg -3'
miRNA:   3'- aCUCGUCUGG--------CCGCagaCG--CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 33007 0.7 0.452119
Target:  5'- gGAGCGG-CCGGgGggcGCGCgGGGCg -3'
miRNA:   3'- aCUCGUCuGGCCgCagaCGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 62597 0.7 0.461175
Target:  5'- cGGGCAGGCaaagaGcGCGUgCacggGCGCCGGGUa -3'
miRNA:   3'- aCUCGUCUGg----C-CGCA-Ga---CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 23041 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 22912 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 88379 0.7 0.470327
Target:  5'- -cGGCGGACCGGCcccgcGCGgCGGGCg -3'
miRNA:   3'- acUCGUCUGGCCGcaga-CGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 57773 0.7 0.470327
Target:  5'- aGAGCGGgcGCCGGCGcCacGCGUCGcacGGCg -3'
miRNA:   3'- aCUCGUC--UGGCCGCaGa-CGCGGC---UCG- -5'
6361 3' -59.9 NC_001847.1 + 23121 0.7 0.470327
Target:  5'- gUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 3349 0.7 0.461175
Target:  5'- cGGGUAGGCCaugggGGCGUacgcGCGCCGcaGGCu -3'
miRNA:   3'- aCUCGUCUGG-----CCGCAga--CGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 127579 0.7 0.461175
Target:  5'- cGGcCAGGCaGGUGUCgcgcaUGCGCUGAGCa -3'
miRNA:   3'- aCUcGUCUGgCCGCAG-----ACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 97001 0.7 0.461175
Target:  5'- aGAGCGGGUCGGCGgcgCUG-GCCGcggggGGCa -3'
miRNA:   3'- aCUCGUCUGGCCGCa--GACgCGGC-----UCG- -5'
6361 3' -59.9 NC_001847.1 + 1602 0.7 0.461175
Target:  5'- cGGGcCAGcGCgCGGCGcaCUGCGCCGcGGCa -3'
miRNA:   3'- aCUC-GUC-UG-GCCGCa-GACGCGGC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.