miRNA display CGI


Results 121 - 140 of 474 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 3349 0.7 0.461175
Target:  5'- cGGGUAGGCCaugggGGCGUacgcGCGCCGcaGGCu -3'
miRNA:   3'- aCUCGUCUGG-----CCGCAga--CGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 1602 0.7 0.461175
Target:  5'- cGGGcCAGcGCgCGGCGcaCUGCGCCGcGGCa -3'
miRNA:   3'- aCUC-GUC-UG-GCCGCa-GACGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 33007 0.7 0.452119
Target:  5'- gGAGCGG-CCGGgGggcGCGCgGGGCg -3'
miRNA:   3'- aCUCGUCuGGCCgCagaCGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 1918 0.7 0.460265
Target:  5'- gGGGCAGguggcgaggcuuaGCCGGCGcgCgGCGCaGAGCu -3'
miRNA:   3'- aCUCGUC-------------UGGCCGCa-GaCGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 8137 0.7 0.461175
Target:  5'- gGGGCGGG-CGGUG-CUGCGCgaGGGCu -3'
miRNA:   3'- aCUCGUCUgGCCGCaGACGCGg-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 84170 0.7 0.488902
Target:  5'- cGAGCugcgccgccGACUGGgCGUCgUGCGCC-AGCa -3'
miRNA:   3'- aCUCGu--------CUGGCC-GCAG-ACGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 95132 0.7 0.498317
Target:  5'- --uGCAGucGCCGGCG-CUGCGCUuggGGGUg -3'
miRNA:   3'- acuCGUC--UGGCCGCaGACGCGG---CUCG- -5'
6361 3' -59.9 NC_001847.1 + 10132 0.7 0.461175
Target:  5'- cGAGCGGGcCCGGcCGUa-GCG-CGAGCg -3'
miRNA:   3'- aCUCGUCU-GGCC-GCAgaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 81552 0.7 0.470327
Target:  5'- cGAGCucGCCGGCcccgcgcagCUGCGCgGGGCc -3'
miRNA:   3'- aCUCGucUGGCCGca-------GACGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 53010 0.7 0.470327
Target:  5'- gGAGCcGACagCGGCGgccgCUGCGCgcuCGGGCc -3'
miRNA:   3'- aCUCGuCUG--GCCGCa---GACGCG---GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 35502 0.7 0.470327
Target:  5'- cGcGCGGAggccaCGGCG-C-GCGCCGAGCg -3'
miRNA:   3'- aCuCGUCUg----GCCGCaGaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 47563 0.7 0.470327
Target:  5'- cGGGgAGcCCGGCGgccgCgcacGCGCCGAGg -3'
miRNA:   3'- aCUCgUCuGGCCGCa---Ga---CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 125974 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 41973 0.7 0.47957
Target:  5'- gUGGGCGGcagucugucucGCCGaGCG-CUGCGUCGGcGCg -3'
miRNA:   3'- -ACUCGUC-----------UGGC-CGCaGACGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 129301 0.7 0.47957
Target:  5'- gGGGCGGGCCuggugcaaGGCGg--GCcuGCCGGGCg -3'
miRNA:   3'- aCUCGUCUGG--------CCGCagaCG--CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 111802 0.7 0.47957
Target:  5'- cGGGCAGACgGGgGUggGgGCUGGGUg -3'
miRNA:   3'- aCUCGUCUGgCCgCAgaCgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 104351 0.7 0.470327
Target:  5'- -cGGCAGACgcggCGGCGUCcGCGCCc-GCa -3'
miRNA:   3'- acUCGUCUG----GCCGCAGaCGCGGcuCG- -5'
6361 3' -59.9 NC_001847.1 + 105030 0.7 0.488902
Target:  5'- -cAGUAGGCCGccaGCGcCgcgGCGCUGGGCg -3'
miRNA:   3'- acUCGUCUGGC---CGCaGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 45791 0.7 0.498317
Target:  5'- -cGGC--GCCGGCGUCgGCGgCCGAGa -3'
miRNA:   3'- acUCGucUGGCCGCAGaCGC-GGCUCg -5'
6361 3' -59.9 NC_001847.1 + 104415 0.7 0.461175
Target:  5'- cGGGcCAGcGCgCGGCGcaCUGCGCCGcGGCa -3'
miRNA:   3'- aCUC-GUC-UG-GCCGCa-GACGCGGC-UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.