miRNA display CGI


Results 141 - 160 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 23041 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 22912 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 102474 0.7 0.470327
Target:  5'- cGAGCGGGCCcGCGcCgccgGCGCCGucCa -3'
miRNA:   3'- aCUCGUCUGGcCGCaGa---CGCGGCucG- -5'
6361 3' -59.9 NC_001847.1 + 110181 0.69 0.536737
Target:  5'- cGAGCGcccGACgGGCaUCUGCGUguaccuCGAGCc -3'
miRNA:   3'- aCUCGU---CUGgCCGcAGACGCG------GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 92973 0.69 0.536737
Target:  5'- cGGGCGGGCgGGCGgcgUGCaGCCacacgcGAGCg -3'
miRNA:   3'- aCUCGUCUGgCCGCag-ACG-CGG------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 18173 0.69 0.536737
Target:  5'- -aGGCGG-UCGGCGUCgcaggGCaGCCgGAGCa -3'
miRNA:   3'- acUCGUCuGGCCGCAGa----CG-CGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 4630 0.69 0.536737
Target:  5'- cGGGCGGcccGCCGGCGcUCgcGCGCCucAGCc -3'
miRNA:   3'- aCUCGUC---UGGCCGC-AGa-CGCGGc-UCG- -5'
6361 3' -59.9 NC_001847.1 + 25126 0.69 0.536737
Target:  5'- aGAGCGGG-CGGCGgccgcggCUGCcuaaaGCCGaAGCg -3'
miRNA:   3'- aCUCGUCUgGCCGCa------GACG-----CGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 19431 0.69 0.527027
Target:  5'- gGAGCgccaaAGGCCGcGCGcCcGCuGCCGGGCc -3'
miRNA:   3'- aCUCG-----UCUGGC-CGCaGaCG-CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 103956 0.69 0.527027
Target:  5'- aGAGCAccgucgaUGGCGUCgGCGCCcAGCg -3'
miRNA:   3'- aCUCGUcug----GCCGCAGaCGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 2331 0.69 0.536737
Target:  5'- cGGGCGGGCagCGGCGgcucccgCcGCGCCG-GCc -3'
miRNA:   3'- aCUCGUCUG--GCCGCa------GaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 92038 0.69 0.536737
Target:  5'- cGGGCAccGCCGGCGcCUccgggcgccuccGcCGCCGAGCc -3'
miRNA:   3'- aCUCGUc-UGGCCGCaGA------------C-GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 58669 0.69 0.545527
Target:  5'- --uGCAGgcGCCGcugccguggaagcGCGUCUGUGCCGcGGCg -3'
miRNA:   3'- acuCGUC--UGGC-------------CGCAGACGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 125804 0.69 0.546507
Target:  5'- -cGGCGGGCCGGCGggcgugcagCUcaaagcgggucGgGCCGAGUg -3'
miRNA:   3'- acUCGUCUGGCCGCa--------GA-----------CgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 10598 0.69 0.546507
Target:  5'- cGcGCGGGCCGGCGcCggcccGCGCCcuGCu -3'
miRNA:   3'- aCuCGUCUGGCCGCaGa----CGCGGcuCG- -5'
6361 3' -59.9 NC_001847.1 + 32054 0.69 0.546507
Target:  5'- cGcGCGGGCuCGGCGgcccccgggCUcgggccccuggGCGCCGGGCg -3'
miRNA:   3'- aCuCGUCUG-GCCGCa--------GA-----------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 96483 0.69 0.546507
Target:  5'- cGGGCGG-CgGGCGUCgccacggcaacGCGgCGGGCa -3'
miRNA:   3'- aCUCGUCuGgCCGCAGa----------CGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 86986 0.69 0.546507
Target:  5'- cGGcCGGGCCGGCG-C-GCGCCG-GCc -3'
miRNA:   3'- aCUcGUCUGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 21731 0.69 0.555349
Target:  5'- gGGcGCGGGCCGGCGccggcccgcgcgCgcgggggggccgccgGCGCCGGGCc -3'
miRNA:   3'- aCU-CGUCUGGCCGCa-----------Ga--------------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 58205 0.69 0.527027
Target:  5'- -cAGCAGGCgcuccgGGCGgaUCUGCccGCCGGGCg -3'
miRNA:   3'- acUCGUCUGg-----CCGC--AGACG--CGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.