miRNA display CGI


Results 81 - 100 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 19630 0.71 0.434302
Target:  5'- gGGGC--GCCGGCGUCgGCGCgCG-GCc -3'
miRNA:   3'- aCUCGucUGGCCGCAGaCGCG-GCuCG- -5'
6361 3' -59.9 NC_001847.1 + 116801 0.71 0.44316
Target:  5'- uUGGGC-GACC-GCGaCUGCGCCcGGCa -3'
miRNA:   3'- -ACUCGuCUGGcCGCaGACGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 1946 0.71 0.44316
Target:  5'- cGGGCc-GCCGGCGcUCguccuCGCCGGGCg -3'
miRNA:   3'- aCUCGucUGGCCGC-AGac---GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 104759 0.71 0.44316
Target:  5'- cGGGCc-GCCGGCGcUCguccuCGCCGGGCg -3'
miRNA:   3'- aCUCGucUGGCCGC-AGac---GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 122102 0.71 0.44316
Target:  5'- aGAGCAGcGCCucagugGGCGgcaugCUGCGCCGucuacuGCu -3'
miRNA:   3'- aCUCGUC-UGG------CCGCa----GACGCGGCu-----CG- -5'
6361 3' -59.9 NC_001847.1 + 65904 0.71 0.44316
Target:  5'- cGuAGUAGGCCaGCGUUgccgcgGCGCCG-GCg -3'
miRNA:   3'- aC-UCGUCUGGcCGCAGa-----CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 31862 0.7 0.452119
Target:  5'- cGGGCucGCCGGCGUugCUGCcgGCgGAGCc -3'
miRNA:   3'- aCUCGucUGGCCGCA--GACG--CGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 81218 0.7 0.452119
Target:  5'- aGAuGCAGGCuCGGCGgcagCgGCGgCGGGCc -3'
miRNA:   3'- aCU-CGUCUG-GCCGCa---GaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 84107 0.7 0.452119
Target:  5'- aUGGGaCAGG-CGGCGUCgUGCaGCCGAuGCc -3'
miRNA:   3'- -ACUC-GUCUgGCCGCAG-ACG-CGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 33007 0.7 0.452119
Target:  5'- gGAGCGG-CCGGgGggcGCGCgGGGCg -3'
miRNA:   3'- aCUCGUCuGGCCgCagaCGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 99499 0.7 0.460265
Target:  5'- --cGCGGAaauuagcCUGGaGUUUGCGCCGAGCc -3'
miRNA:   3'- acuCGUCU-------GGCCgCAGACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 1918 0.7 0.460265
Target:  5'- gGGGCAGguggcgaggcuuaGCCGGCGcgCgGCGCaGAGCu -3'
miRNA:   3'- aCUCGUC-------------UGGCCGCa-GaCGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 8137 0.7 0.461175
Target:  5'- gGGGCGGG-CGGUG-CUGCGCgaGGGCu -3'
miRNA:   3'- aCUCGUCUgGCCGCaGACGCGg-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 104415 0.7 0.461175
Target:  5'- cGGGcCAGcGCgCGGCGcaCUGCGCCGcGGCa -3'
miRNA:   3'- aCUC-GUC-UG-GCCGCa-GACGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 10132 0.7 0.461175
Target:  5'- cGAGCGGGcCCGGcCGUa-GCG-CGAGCg -3'
miRNA:   3'- aCUCGUCU-GGCC-GCAgaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 1602 0.7 0.461175
Target:  5'- cGGGcCAGcGCgCGGCGcaCUGCGCCGcGGCa -3'
miRNA:   3'- aCUC-GUC-UG-GCCGCa-GACGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 62597 0.7 0.461175
Target:  5'- cGGGCAGGCaaagaGcGCGUgCacggGCGCCGGGUa -3'
miRNA:   3'- aCUCGUCUGg----C-CGCA-Ga---CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 97001 0.7 0.461175
Target:  5'- aGAGCGGGUCGGCGgcgCUG-GCCGcggggGGCa -3'
miRNA:   3'- aCUCGUCUGGCCGCa--GACgCGGC-----UCG- -5'
6361 3' -59.9 NC_001847.1 + 127579 0.7 0.461175
Target:  5'- cGGcCAGGCaGGUGUCgcgcaUGCGCUGAGCa -3'
miRNA:   3'- aCUcGUCUGgCCGCAG-----ACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 3349 0.7 0.461175
Target:  5'- cGGGUAGGCCaugggGGCGUacgcGCGCCGcaGGCu -3'
miRNA:   3'- aCUCGUCUGG-----CCGCAga--CGCGGC--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.