miRNA display CGI


Results 101 - 120 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 97001 0.7 0.461175
Target:  5'- aGAGCGGGUCGGCGgcgCUG-GCCGcggggGGCa -3'
miRNA:   3'- aCUCGUCUGGCCGCa--GACgCGGC-----UCG- -5'
6361 3' -59.9 NC_001847.1 + 3349 0.7 0.461175
Target:  5'- cGGGUAGGCCaugggGGCGUacgcGCGCCGcaGGCu -3'
miRNA:   3'- aCUCGUCUGG-----CCGCAga--CGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 125934 0.7 0.470327
Target:  5'- gUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 88379 0.7 0.470327
Target:  5'- -cGGCGGACCGGCcccgcGCGgCGGGCg -3'
miRNA:   3'- acUCGUCUGGCCGcaga-CGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 5611 0.7 0.470327
Target:  5'- -cGGUAGACgGGCGUggGCGCCGcGGUc -3'
miRNA:   3'- acUCGUCUGgCCGCAgaCGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 81552 0.7 0.470327
Target:  5'- cGAGCucGCCGGCcccgcgcagCUGCGCgGGGCc -3'
miRNA:   3'- aCUCGucUGGCCGca-------GACGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 53010 0.7 0.470327
Target:  5'- gGAGCcGACagCGGCGgccgCUGCGCgcuCGGGCc -3'
miRNA:   3'- aCUCGuCUG--GCCGCa---GACGCG---GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 47563 0.7 0.470327
Target:  5'- cGGGgAGcCCGGCGgccgCgcacGCGCCGAGg -3'
miRNA:   3'- aCUCgUCuGGCCGCa---Ga---CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 23121 0.7 0.470327
Target:  5'- gUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 57773 0.7 0.470327
Target:  5'- aGAGCGGgcGCCGGCGcCacGCGUCGcacGGCg -3'
miRNA:   3'- aCUCGUC--UGGCCGCaGa-CGCGGC---UCG- -5'
6361 3' -59.9 NC_001847.1 + 102474 0.7 0.470327
Target:  5'- cGAGCGGGCCcGCGcCgccgGCGCCGucCa -3'
miRNA:   3'- aCUCGUCUGGcCGCaGa---CGCGGCucG- -5'
6361 3' -59.9 NC_001847.1 + 104351 0.7 0.470327
Target:  5'- -cGGCAGACgcggCGGCGUCcGCGCCc-GCa -3'
miRNA:   3'- acUCGUCUG----GCCGCAGaCGCGGcuCG- -5'
6361 3' -59.9 NC_001847.1 + 35502 0.7 0.470327
Target:  5'- cGcGCGGAggccaCGGCG-C-GCGCCGAGCg -3'
miRNA:   3'- aCuCGUCUg----GCCGCaGaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 26488 0.7 0.47957
Target:  5'- gGGGCGGGCCuggugcaaGGCGg--GCcuGCCGGGCg -3'
miRNA:   3'- aCUCGUCUGG--------CCGCagaCG--CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 81025 0.7 0.47957
Target:  5'- --uGCAG-CCGGUG-CUGCGCCucccgcgcggcGAGCg -3'
miRNA:   3'- acuCGUCuGGCCGCaGACGCGG-----------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 8989 0.7 0.47957
Target:  5'- cGGGCAGACgGGgGUggGgGCUGGGUg -3'
miRNA:   3'- aCUCGUCUGgCCgCAgaCgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 23041 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 34293 0.7 0.47957
Target:  5'- -cGGCGGGCCGGCGcUCcgGCccugGCCgGAGCc -3'
miRNA:   3'- acUCGUCUGGCCGC-AGa-CG----CGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 23161 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 74492 0.7 0.47957
Target:  5'- uUGAuGCAGcaGCC-GCGcCUGCGCCGcGCg -3'
miRNA:   3'- -ACU-CGUC--UGGcCGCaGACGCGGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.