miRNA display CGI


Results 121 - 140 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 74492 0.7 0.47957
Target:  5'- uUGAuGCAGcaGCC-GCGcCUGCGCCGcGCg -3'
miRNA:   3'- -ACU-CGUC--UGGcCGCaGACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 22912 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 111802 0.7 0.47957
Target:  5'- cGGGCAGACgGGgGUggGgGCUGGGUg -3'
miRNA:   3'- aCUCGUCUGgCCgCAgaCgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125854 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 43436 0.7 0.47957
Target:  5'- --uGCuGGCCGGCGUCgcgacccgggGCgacggcgcggucGCCGAGCg -3'
miRNA:   3'- acuCGuCUGGCCGCAGa---------CG------------CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 129301 0.7 0.47957
Target:  5'- gGGGCGGGCCuggugcaaGGCGg--GCcuGCCGGGCg -3'
miRNA:   3'- aCUCGUCUGG--------CCGCagaCG--CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 8989 0.7 0.47957
Target:  5'- cGGGCAGACgGGgGUggGgGCUGGGUg -3'
miRNA:   3'- aCUCGUCUGgCCgCAgaCgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 41973 0.7 0.47957
Target:  5'- gUGGGCGGcagucugucucGCCGaGCG-CUGCGUCGGcGCg -3'
miRNA:   3'- -ACUCGUC-----------UGGC-CGCaGACGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 34505 0.7 0.47957
Target:  5'- cGAGCgAGGCCGacGCGgacgGCGCCG-GCg -3'
miRNA:   3'- aCUCG-UCUGGC--CGCaga-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 2217 0.7 0.488902
Target:  5'- -cAGUAGGCCGccaGCGcCgcgGCGCUGGGCg -3'
miRNA:   3'- acUCGUCUGGC---CGCaGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 92984 0.7 0.488902
Target:  5'- -cAGCAcccGCCGGCaacGUCcagGCGCCGGGCc -3'
miRNA:   3'- acUCGUc--UGGCCG---CAGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31471 0.7 0.488902
Target:  5'- aUGGGCG--UCGGUGUCUuucGCGCCG-GCg -3'
miRNA:   3'- -ACUCGUcuGGCCGCAGA---CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 134761 0.7 0.488902
Target:  5'- gGAGCGcGGuCCGGCGcgCggcGCGCgGGGCg -3'
miRNA:   3'- aCUCGU-CU-GGCCGCa-Ga--CGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 105030 0.7 0.488902
Target:  5'- -cAGUAGGCCGccaGCGcCgcgGCGCUGGGCg -3'
miRNA:   3'- acUCGUCUGGC---CGCaGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 59400 0.7 0.488902
Target:  5'- gGAGCcggcggAGGCgCGGCGgucaucgCUGCGCCccGGGCc -3'
miRNA:   3'- aCUCG------UCUG-GCCGCa------GACGCGG--CUCG- -5'
6361 3' -59.9 NC_001847.1 + 31948 0.7 0.488902
Target:  5'- gGAGCGcGGuCCGGCGcgCggcGCGCgGGGCg -3'
miRNA:   3'- aCUCGU-CU-GGCCGCa-Ga--CGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 84170 0.7 0.488902
Target:  5'- cGAGCugcgccgccGACUGGgCGUCgUGCGCC-AGCa -3'
miRNA:   3'- aCUCGu--------CUGGCC-GCAG-ACGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 96633 0.7 0.488902
Target:  5'- aGAGCAcagcGCCGGCGaCcGCGCCGccccccGGCg -3'
miRNA:   3'- aCUCGUc---UGGCCGCaGaCGCGGC------UCG- -5'
6361 3' -59.9 NC_001847.1 + 19260 0.7 0.488902
Target:  5'- -cGGCGGACCGGU-UCUG-GCCG-GCg -3'
miRNA:   3'- acUCGUCUGGCCGcAGACgCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 45791 0.7 0.498317
Target:  5'- -cGGC--GCCGGCGUCgGCGgCCGAGa -3'
miRNA:   3'- acUCGucUGGCCGCAGaCGC-GGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.