miRNA display CGI


Results 101 - 120 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 53903 0.66 0.686298
Target:  5'- -cGGCAGGCCcagccuGGCccgccgccgCUGcCGCCGAGCc -3'
miRNA:   3'- acUCGUCUGG------CCGca-------GAC-GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 68972 0.66 0.686298
Target:  5'- gGGGCGG-CCGGCGcCaGC-CCGGGa -3'
miRNA:   3'- aCUCGUCuGGCCGCaGaCGcGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 76935 0.66 0.686298
Target:  5'- cGGGCAGAuCCGcccggaGCGcCUGCugGCCGAagGCg -3'
miRNA:   3'- aCUCGUCU-GGC------CGCaGACG--CGGCU--CG- -5'
6361 3' -59.9 NC_001847.1 + 61246 0.66 0.686298
Target:  5'- cGGGCuGGGCCauCG-CUGCGCgGGGCg -3'
miRNA:   3'- aCUCG-UCUGGccGCaGACGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 20159 0.66 0.686298
Target:  5'- cGAuGCGGACuCGGCG-CUcaggcaacgggcGCGCCGGuauGCg -3'
miRNA:   3'- aCU-CGUCUG-GCCGCaGA------------CGCGGCU---CG- -5'
6361 3' -59.9 NC_001847.1 + 26652 0.66 0.686298
Target:  5'- cUGGGCGGccccgGCCGGCccacCUucGCGCCuGGGCg -3'
miRNA:   3'- -ACUCGUC-----UGGCCGca--GA--CGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 16697 0.66 0.686298
Target:  5'- cGGGCGaGCCGGCag--GCGCagaCGAGCa -3'
miRNA:   3'- aCUCGUcUGGCCGcagaCGCG---GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 97319 0.66 0.686298
Target:  5'- -cGGCAGGCgcguCGGCGUC-GCGCCcgcccGGCc -3'
miRNA:   3'- acUCGUCUG----GCCGCAGaCGCGGc----UCG- -5'
6361 3' -59.9 NC_001847.1 + 129465 0.66 0.686298
Target:  5'- cUGGGCGGccccgGCCGGCccacCUucGCGCCuGGGCg -3'
miRNA:   3'- -ACUCGUC-----UGGCCGca--GA--CGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 60387 0.66 0.686298
Target:  5'- gGGGCGcgcgccGACC-GCGUCUcccagccggGuCGCCGAGCu -3'
miRNA:   3'- aCUCGU------CUGGcCGCAGA---------C-GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 18561 0.66 0.686298
Target:  5'- gGGGCucgguGACCGGCccgUGUGCCGcGCc -3'
miRNA:   3'- aCUCGu----CUGGCCGcagACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 113930 0.66 0.686298
Target:  5'- -aAGCAGcgcgcggucgcGgCGGCGUCUccuacGcCGCCGGGCg -3'
miRNA:   3'- acUCGUC-----------UgGCCGCAGA-----C-GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 13317 0.66 0.686298
Target:  5'- cGAgGCAGACgGGC-UCcggcacggGCGgCGAGCa -3'
miRNA:   3'- aCU-CGUCUGgCCGcAGa-------CGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 59595 0.66 0.685303
Target:  5'- cGGGCagcucggccgccgAGAUCGcGCGg-UGCGCCGuGCg -3'
miRNA:   3'- aCUCG-------------UCUGGC-CGCagACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 89673 0.66 0.685303
Target:  5'- cGAGCAcgcgcGACUGGCGcgcgcuaUUUGCGCgcgccgcgaCGGGCg -3'
miRNA:   3'- aCUCGU-----CUGGCCGC-------AGACGCG---------GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 30990 0.66 0.683314
Target:  5'- gGAGCAGcgaagcggcaccauGuCCGGCGUUgccgGCGCgCGcGCg -3'
miRNA:   3'- aCUCGUC--------------U-GGCCGCAGa---CGCG-GCuCG- -5'
6361 3' -59.9 NC_001847.1 + 78958 0.67 0.676339
Target:  5'- --cGCAGGCUGGCG-CUcGCGCagccucggGGGCg -3'
miRNA:   3'- acuCGUCUGGCCGCaGA-CGCGg-------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 3774 0.67 0.676339
Target:  5'- cGAGCAGcCCgGGCGggaUGUGCUGcacgacGGCg -3'
miRNA:   3'- aCUCGUCuGG-CCGCag-ACGCGGC------UCG- -5'
6361 3' -59.9 NC_001847.1 + 53827 0.67 0.676339
Target:  5'- cGGGCGcGGCUGGCGgcggcagCggcgGCGCUG-GCg -3'
miRNA:   3'- aCUCGU-CUGGCCGCa------Ga---CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 61478 0.67 0.676339
Target:  5'- aUGGcGCGGGCCagGGCGUCcagguaCGCCGGGa -3'
miRNA:   3'- -ACU-CGUCUGG--CCGCAGac----GCGGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.