miRNA display CGI


Results 81 - 100 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 21731 0.69 0.555349
Target:  5'- gGGcGCGGGCCGGCGccggcccgcgcgCgcgggggggccgccgGCGCCGGGCc -3'
miRNA:   3'- aCU-CGUCUGGCCGCa-----------Ga--------------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 21868 0.66 0.735268
Target:  5'- gGuGCGGGggcugCGGCGcgCUGCcgagGCCGAGCc -3'
miRNA:   3'- aCuCGUCUg----GCCGCa-GACG----CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 21931 0.67 0.645283
Target:  5'- cGAGCGcGAgCCGGaguccgagcucguCGUCcggGCGCUGGGCc -3'
miRNA:   3'- aCUCGU-CU-GGCC-------------GCAGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 22090 0.66 0.725612
Target:  5'- -aAGCGGGCcCGGCaggcGCGCCGGGg -3'
miRNA:   3'- acUCGUCUG-GCCGcagaCGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 22169 0.69 0.527027
Target:  5'- cGcAGCGGGCCGGC--CUGC-UCGGGCg -3'
miRNA:   3'- aC-UCGUCUGGCCGcaGACGcGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 22384 0.66 0.715878
Target:  5'- gGGGCAGAa-GGCGcccgggCcGCGgCGAGCg -3'
miRNA:   3'- aCUCGUCUggCCGCa-----GaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 22810 0.71 0.408359
Target:  5'- aGAuGCGGGCCGGCGgcggccgCUcccCGCCGAGg -3'
miRNA:   3'- aCU-CGUCUGGCCGCa------GAc--GCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 22912 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 22952 0.72 0.375316
Target:  5'- cUGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCGUCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 22983 0.68 0.606102
Target:  5'- gGGGUGGGCUGG-G-CUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCgCaGACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 23013 0.71 0.416899
Target:  5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 23041 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 23121 0.7 0.470327
Target:  5'- gUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 23161 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 24218 0.68 0.580112
Target:  5'- gGAGCAGGCgcuCGGCGaUCUccacguucagccgccGCGCggCGGGCg -3'
miRNA:   3'- aCUCGUCUG---GCCGC-AGA---------------CGCG--GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 25126 0.69 0.536737
Target:  5'- aGAGCGGG-CGGCGgccgcggCUGCcuaaaGCCGaAGCg -3'
miRNA:   3'- aCUCGUCUgGCCGCa------GACG-----CGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 25225 0.74 0.287494
Target:  5'- aGAGCAuGAUCGGCGUCgcgGgGacaaCGAGCu -3'
miRNA:   3'- aCUCGU-CUGGCCGCAGa--CgCg---GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 25990 0.69 0.507813
Target:  5'- aGGGCGGGCgGGCGg--GCGCgCaGGCg -3'
miRNA:   3'- aCUCGUCUGgCCGCagaCGCG-GcUCG- -5'
6361 3' -59.9 NC_001847.1 + 26368 0.72 0.374514
Target:  5'- cGGGUGGGCCGcccggcaGCGUCcgGCGCCcAGCg -3'
miRNA:   3'- aCUCGUCUGGC-------CGCAGa-CGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 26488 0.7 0.47957
Target:  5'- gGGGCGGGCCuggugcaaGGCGg--GCcuGCCGGGCg -3'
miRNA:   3'- aCUCGUCUGG--------CCGCagaCG--CGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.